DreINT0005234 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8193227-8196222:+
Coord C1 exon
chr25:8193227-8193341
Coord A exon
chr25:8193342-8196131
Coord C2 exon
chr25:8196132-8196222
Length
2790 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACTGTGTGATGTTGTGATAGGTG
3' ss Score
7.54
Exon sequences
Seq C1 exon
AGTGACGCTGCCCGTCCATGTGTCAGGAATCCTTGTGGAAGAAAACACAATTTACACCAGACTCTATTCCAAAATGGGCATCACTGTCATGTGGAACAAAGATGATGCAGTCATG
Seq A exon
GTGAGTTTAGAAGTTTAAAGTGGGGCTAATATAAGATTAGAATCAACTTGAACGTCGTAAAGGGGGGAAAATAAGTTTTAACCACTTCACCATTTTTCTCAGAAAACATATTTTTTTAAAGGTGCTGTTGAGTTGAAATTTACCCCGGATGTTCGTGACACCCAGAGAAATCCATATATGCAAATAAAATAAATCTAATTAGTTTACAAATTAAGTTATGTGTAATAAAATGAAATAACGCAAGGGGAAAAAAAATGAACACATGAAGAAAGGGAGGTGTAGAAAGGCAGTGACAGCTGCTGAAATCTCTCAGTAGTTATTAAGTAATCCTCTGCCCTTTCTCATTGTAATTTACTAATCACTGCTTTAGTTCAACATCTACATTAGATGATAGATGATGAAGATGAAACCAGTGTAGACATTTCAGTAAGACAATAAACTCTCAAATGCTTTCAGAGAAAGAAAATCAAACTGGAGAATGGCCCAGCCAATCACCTGACTTGTATCAAATAAAAAACACAAAAAAAAAACTCAGATTTGATAGACGAGACCCGTAGAACCATCAAGATTTTTTACACTCTGTTAAAGTCTGTGAAACAAAATCACACCGGAGCAATGTGTGTGACGTTCTAAATTTGAGACTCCTCTTTAAGCTAACATCACCAAAAAAAAGCCTTTCTAAAGTATTAAATATGTTTCAGTAGTTCAGTACTTTCTCCTTCTGTCATTTCATTCTTATTACACAACTAATTTTTCAGATAGTTTTTTGTTTTGTTTTATAATTATGTTTGTATTCTGGGTTTTTAACAAAATCTGGTTCAGTTCCATGTTAACAACAACTCGTTTAGAAATATTATTCCCAGGAAAAGACATGCCGGGTTCAATGCTTAATTTTCCTGATGTATTATGGATATCAGTTCAGTTTATGTATAAAGCACATTTTAAAAGCTCATACAGATAGAAAAAGGTTTGTTTTTTTACTAGAGAAATCTGCACATTTGTGAACTAGGCTACTAGTTAATACTTGACAAAATAACCTTAGTGAATCTGAACATTCACTACTGTTAAAAACTAATTTTAAAAACTATGAGTATAAATATAATTTAACCCTTATGTGCTGTTAGGGATGTTTTCATCCACTCTGGGGTGATGTTGAGTCTTAATTTGGCCATAACTTTTTCTTTGTTTCAGCTAGCAGAAAATCTTATTTTGACATTTTGGGAAAATGCTTAGAATTTAAATAATAATCTGGGAAAAATGTCTACACTTTTGTTATGTTCGGGAACATTTTATTTGAATAAATCTGTCAAAACTACTAAATTGCGATTTTAAATCTTTAATTGCCAAATTCATAAATGATGTCACTGATTTGGTGAAAAAAATCACACAAAATGGCATATTTTCTATATATTGGACATGTGAAACAACATTTCCTTTGATTAATTGGTTTTAGCCCCCCCCAGTTTTCTGTTGGTGCCTTTTTTTCCCTATTGGCATCCATTATAACCACATTGTTTTGAATACAATATATGAAAACCATATAATCATGCATTTTTGATTGTTGGTGGTTTTCCCTACTGGGAAAAGGTCAAATGTGTAATTTTACTGGGCACCCTTAACCCTTTGGTTAGGCCTGTGCAAAAAAAAAGCTTAGTTTCTAGATTTTACAAGAGTATAAAAGTAAATTAAGTAACTTATTGTGTGTGTATGTGTGTTTGTGAGGGTGTGAGAGTGACCTTCTAAATCTAAATATGCATCTCAGCTCTCAGAACTACATGGAGTAAACAAAAACAAAGACTGTGTGTTGATGCATTATCAAATGTGCTTATAATGGAAGTCAATGGGGCAAAACAGCCACCCACAGTAAATTAAGGAGAAAAAATAAAAATCTAACAATGCGTCAAAGCCATTGTTGTTACTCATCATTGATGTGTCCAAGACTGTGATAAAAGGTAAAAACAAATCCAGTCCACAATTACTTTTTCTATTGAAAATAGGTCATTTTGTGTGTTTTTTTGTTTACAAATCAGTGACATAATTTGGGAATTTGGCACAAAATCCTTTAAATTTAGTAGTTTTGATCAGGACTGAGGTTGATTAACAGATTTATGCAAAGAATTTTGAAAAAAACTTTTATCTGATGCATTTTTACAGCAGTTTAATTCAGTGGATGTTTTCATCCCGAACATAACAAAAGGGTAGACAATTTGAACAGTGCACAATAGTTAAATGATTTTTGTCATGTGACCTACGGCGTCGTTTAGCTTTACTAGCATTCACAGAAACTATCGCTACTGCATGAGAGTGGAAATTGTCAATCGTTTTCACACTTCGAAAACTTTTCGCTTACTATGCGACTACTTTGGAACTTTAAGGGTTAAAAGAAAATTGTAAAAACACAGTTCTTGATATTTGAGCAAAGTTATTTGGAGATCAGAAATTATTGCAAAACATGACCGTGTTTACTTGACGTAAAACTAGTTTACACCACAGGAAACCAGTAACATTAAGAGGTCTTTCAAGAGAGTAGTGAATGATTTAGCATATTGTGCAAGACGCCGAAACATGTTAAGTCAAGTTCTATATAAGGCAATTTTGAGTGACACCCTGAAATGTCCTCATGAAGATAATACTTCAGTCTGTAAGTGGCATTCATCGGTATATACTTATGTTATTAATTCTCATAGCACTTTCACACAAGACTTCGACACCAATTTCATATTTTTGCTACTCACTTTGACAGTCAAGTCTAATCATTTAACCACAAACTACTGTGTGATGTTGTGATAG
Seq C2 exon
GTGGAACTGGACTCAAAGTATTCCAATCGCACTTGTGGATTGTGTGGTGATTTCAATGGCATTCCTGTTTATAATGAGTTTATTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.7=100)
A:
NA
C2:
PF0009420=VWD=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]