RnoINT0000884 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214727896-214728486:+
Coord C1 exon
chr1:214727896-214728010
Coord A exon
chr1:214728011-214728395
Coord C2 exon
chr1:214728396-214728486
Length
385 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GATATCTCCTCCAATTTCAGCTG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGTCCAGCTGCCCTTCAGCCAGTCTGGGGTCCTCATTGAGCTCAGCAATGGCTACCTGAAGGTGGTGGCCAGGCTGGGGCTGGTCTTCATGTGGAATGATGATGACAGTCTTCTG
Seq A exon
GTGAGGGAGAGTAGAGTCTCCTGGTGGGGGGTGGGCATGGGTGGGAGTGGACATAGCTTTCTGGTAAAATGGGGGCAAAGAATGGAGTCTCTTAGTGAAATCAGGAGGTGGGTAAGGAGAAGGGGCATAAGGCCCCACACAGCTAGAGAAGGTGAGCATCCAGATATCAGCAGAACCTCAGGGTCTTTGCCCCCAGACATAGGTCCTGTGTATTTGGGATGGTTTCTTGAGCCCTGCTCTGAGTCAAGTCTTCATATAACTGATGGGGAGGGTCTTTTGGCTTGTGTCTTCTCTGAGAACCCTCACCTTCTTTTGGGGAGTCTATATTTTACATCCTGGGGTGTCTATAGTGGCAACAGGTGTCTGATATCTCCTCCAATTTCAG
Seq C2 exon
CTGGAGTTGGACACCAAATATGCCAACAAGACTTGTGGTCTCTGTGGAGACTTCAATGGCAGTCCAGAATCCAGCGAGTTTCTCTCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.9=100)
A:
NA
C2:
PF0009420=VWD=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGCTGCCCTTCAG
R:
AGAAACTCGCTGGATTCTGGAC
Band lengths:
198-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]