HsaINT1024100 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10462865-10463188:-
Coord C1 exon
chr17:10463090-10463188
Coord A exon
chr17:10462969-10463089
Coord C2 exon
chr17:10462865-10462968
Length
121 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GTTCTTTTCCATGTGTTCAGAAA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCCGAGTTACTTTTCAGCTAAAGGCTGAAAGAAGCTACCACATATTTTATCAAATCCTGTCCAATAAGAAACCAGAGCTCATTG
Seq A exon
GTAAGACACATCTTTGATTTATTTCTACCAAAGAATAACAGCCCTTCTAAGAAGCCTCTCTGAAATGTTTTTGATGACCAAAGCAATGCTGTCTATATACTGTTCTTTTCCATGTGTTCAG
Seq C2 exon
AAATGCTTCTGATCACCACCAACCCATATGACTTCGCATTTGTCAGCCAAGGGGAAATTACTGTGCCCAGCATTGATGACCAGGAAGAGCTGATGGCCACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGAGAAGTCCCGAGT
R:
ATCTGTGGCCATCAGCTCTTC
Band lengths:
202-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains