MmuINT0103528 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67056725-67057030:+
Coord C1 exon
chr11:67056725-67056823
Coord A exon
chr11:67056824-67056926
Coord C2 exon
chr11:67056927-67057030
Length
103 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GCTCTTTTCCATGTGTCCAGAGA
3' ss Score
5.82
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCAGAGTCACCTTCCAGCTCAAGGCTGAAAGGAGCTACCACATCTTCTACCAAATCATGTCCAATAAGAAACCAGAGCTTATTG
Seq A exon
GTAAGGAACATCCTGATTTATCTCCATCAGGGAAGACCACACCCTGCCCAGGAAATGTGCTGAGAACCAAACTAACTCTGCATGCTCTTTTCCATGTGTCCAG
Seq C2 exon
AGATGCTTCTGATCACCACCAACCCATATGACTTTGCTTACGTCAGTCAAGGTGAAATCACAGTGCCCAGCATTGATGACCAGGAAGAGCTGATGGCCACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGAGAAGTCCAGAGTCA
R:
GTCTGTGGCCATCAGCTCTTC
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: