HsaINT1024128 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10464472-10464708:-
Coord C1 exon
chr17:10464681-10464708
Coord A exon
chr17:10464587-10464680
Coord C2 exon
chr17:10464472-10464586
Length
94 bp
Sequences
Splice sites
5' ss Seq
TACGTATGT
5' ss Score
5.54
3' ss Seq
CTTCTGTTTGAACTTGATAGTGG
3' ss Score
3
Exon sequences
Seq C1 exon
ATCGTGAAAACCAGTCAATCTTGATTAC
Seq A exon
GTATGTAGATTTCGTTACTTTCTTTCTGTTTTGATCATTGTAGTGGCTACTACTACCTTAGATTCTGACCTTTTCTTCTGTTTGAACTTGATAG
Seq C2 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTTACTGGAGAGAAGAAAAAAGAGGAACCTGCCTCTGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAAAACCAGTCAATCTTGA
R:
TTCTTCTCTCCAGTAACTGCAA
Band lengths:
111-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains