HsaINT1024160 @ hg38
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:7578]
Coordinates
chr17:10415116-10415384:-
Coord C1 exon
chr17:10415292-10415384
Coord A exon
chr17:10415180-10415291
Coord C2 exon
chr17:10415116-10415179
Length
112 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TACTAAATATTCTTTTCAAGGGT
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGGACTCTGGAAGATCAAATCATCAGCGCCAATCCCCTACTGGAGGCCTTTGGCAATGCCAAAACTGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GTGAGTCTCTTGGTCTCAACCCCTAACTTCCAGAGTAGCCACGTCTGAATTATTATTTCATTTGCATCTCTCTTTGTGTTTCAGTTTTCTAATACTAAATATTCTTTTCAAG
Seq C2 exon
GGTAAATTCATTAGAATCCACTTTGGTACTACAGGGAAGCTGGCATCTGCTGATATAGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020:ENST00000403437:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCTGGAAGATCAAATCA
R:
GTTTCTATATCAGCAGATGCCAGCT
Band lengths:
155-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains