MmuINT0103682 @ mm10
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67283577-67283865:+
Coord C1 exon
chr11:67283577-67283669
Coord A exon
chr11:67283670-67283801
Coord C2 exon
chr11:67283802-67283865
Length
132 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TATGTCTTTATCTTTTCCAGGGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GGGACCCTGGAAGATCAAATCATCAGTGCTAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAATGACAACTCATCTCGCTTT
Seq A exon
GTGAGTCTCTGGATCACAGAGGGGCCCTACCTGTCCTTACTTGCTGGGGTCATTCCATCTAAGTTGATAATTTAGATGCTTATCTCCATGTGCTTCAGTGTTTAGTATTAAATATGTCTTTATCTTTTCCAG
Seq C2 exon
GGCAAGTTCATCAGAATCCACTTCGGTACCACGGGGAAACTGGCATCAGCTGATATTGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775:ENSMUST00000019625:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCTGGAAGATCAAATCA
R:
AGGTTTCAATATCAGCTGATGCCA
Band lengths:
157-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types