GgaINT0128183 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:372189-372464:-
Coord C1 exon
chr18:372372-372464
Coord A exon
chr18:372253-372371
Coord C2 exon
chr18:372189-372252
Length
119 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTTTTTTTCTTCTTTCAGGGT
3' ss Score
13.21
Exon sequences
Seq C1 exon
GGGACACTTGAGGATCAAATCATCAGTGCCAACCCTCTGTTGGAGGCTTTTGGGAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
Seq A exon
GTAAGTTGTTGCCTGGCTTAAGAAACAAATCTTTTCCTCATCAACGCAACAAATGAAATATTTTCAGACTCAGAGATGGGAAGGCGGATCTCGGTCACATTTTTTTTTTCTTCTTTCAG
Seq C2 exon
GGTAAATTCATCAGAATCCACTTTGGGGCCACAGGCAAACTGGCTTCTGCTGACATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACACTTGAGGATCAAATCA
R:
TTTCAATGTCAGCAGAAGCCAGT
Band lengths:
154-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]