HsaINT0107955 @ hg19
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin, heavy chain 8, skeletal muscle, perinatal [Source:HGNC Symbol;Acc:7578]
Coordinates
chr17:10318433-10318701:-
Coord C1 exon
chr17:10318609-10318701
Coord A exon
chr17:10318497-10318608
Coord C2 exon
chr17:10318433-10318496
Length
112 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TACTAAATATTCTTTTCAAGGGT
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGGACTCTGGAAGATCAAATCATCAGCGCCAATCCCCTACTGGAGGCCTTTGGCAATGCCAAAACTGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GTGAGTCTCTTGGTCTCAACCCCTAACTTCCAGAGTAGCCACGTCTGAATTATTATTTCATTTGCATCTCTCTTTGTGTTTCAGTTTTCTAATACTAAATATTCTTTTCAAG
Seq C2 exon
GGTAAATTCATTAGAATCCACTTTGGTACTACAGGGAAGCTGGCATCTGCTGATATAGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-MYH8:NM_002472:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCTGGAAGATCAAATCA
R:
GTTTCTATATCAGCAGATGCCAGCT
Band lengths:
155-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)