RnoINT0096610 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53824846-53825114:+
Coord C1 exon
chr10:53824846-53824938
Coord A exon
chr10:53824939-53825050
Coord C2 exon
chr10:53825051-53825114
Length
112 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TATGGCTTTATCTTTTCCAGGGC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GGGACCCTGGAGGATCAAATCATCAGTGCCAATCCCTTGCTGGAGGCCTTTGGGAATGCCAAGACTGTGAGAAATGACAACTCCTCTCGCTTT
Seq A exon
GTGAGTCTCTGGATCACCAGAGGAGTCCTACCTGTCCTTTAAGTTGATATTTTAGATGCTTATCTTTATGTGCTTCAGTGTTTAGTACTAAATATGGCTTTATCTTTTCCAG
Seq C2 exon
GGCAAGTTCATCAGAATCCACTTCGGTACCACAGGGAAACTGGCATCTGCTGATATCGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCTGGAGGATCAAATC
R:
TGTTTCGATATCAGCAGATGCCA
Band lengths:
156-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]