HsaINT1024636 @ hg38
Intron Retention
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
Coordinates
chr6:31589526-31590126:-
Coord C1 exon
chr6:31589782-31590126
Coord A exon
chr6:31589634-31589781
Coord C2 exon
chr6:31589526-31589633
Length
148 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTCTCCATTGCCCCATGCAGAAC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GATCCTGTGCTCTCTGGGTGTCCCAGCCCCCTGAGATTCGTACCCTGGAAGGATCCTCTGCCTTCCTGCCCTGCTCCTTCAATGCCAGCCAAGGGAGACTGGCCATTGGCTCCGTCACGTGGTTCCGAGATGAGGTGGTTCCAGGGAAGGAGGTGAGGAATGGAACCCCAGAGTTCAGGGGCCGCCTGGCCCCACTTGCTTCTTCCCGTTTCCTCCATGACCACCAGGCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
Seq A exon
GTGAGATGCTGGGAGGTGGTGTCTCCTCCTGGCTGGAGGCCCCAAGAGGCAATGTCCTTGGGAGGCAGGGATGCTCCTCTGAGGCCCCTTCCCTCCCTGAGCCTGTGTGCACTTCTTCCCCAACCCCCGTCTCCATTGCCCCATGCAG
Seq C2 exon
AACATCCTCAGCTAGGGGCTGGTACAGTCCTCCTCCTTCGGGCTGGATTCTATGCTGTCAGCTTTCTCTCTGTGGCCGTGGGCAGCACCGTCTATTACCAGGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475:ENST00000340027:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAGGTGGTTCCAGGGA
R:
GAGGACTGTACCAGCCCCTAG
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains