RnoINT0099453 @ rn6
Intron Retention
Gene
ENSRNOG00000000854 | Ncr3
Description
natural cytotoxicity triggering receptor 3 [Source:RGD Symbol;Acc:727881]
Coordinates
chr20:5174969-5175548:+
Coord C1 exon
chr20:5174969-5175313
Coord A exon
chr20:5175314-5175416
Coord C2 exon
chr20:5175417-5175548
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCCCGTGTCCTGCTGTAGAGC
3' ss Score
8.09
Exon sequences
Seq C1 exon
GATCCTGTGCTGTCTGGGTGTCTCAGCCCCCTGAGATTCGTGCACAAGAGGGCACCACTGCCTCCCTGCCCTGTTCGTTCAATGCCAGCAGAGGGAAAGCGGCCATTGGCTCTGCCACATGGTACCAAGACAAAGTAGCCCCGGGGATGGAGTTGAGCAACGTGACCCCAGGGTTCAGGGGCCGAGTGGCCTCTTTTTCTGTTTCCCAGTTCATTAGAGGCCACAAGGCCGGGCTGCTCATACAGGACATCCAAAGCCATGACGCCAGAATCTACGTGTGCAGAGTGGAGGTGCTAGGCCTGGGCGTCGGAACAGGAAACGGGACTCGGCTGGTGGTGGAGAAAG
Seq A exon
GTGAGGTGGTGAGAGACCCCCACGATTCAGAGTTCCTGGAAGTTAGGGACTGTCCCCAGCTCTGAGTTCCTGAACTCCTTCCTCTCCCCGTGTCCTGCTGTAG
Seq C2 exon
AGCCTCCTCAACAAGCCTCCAACGCAGAGCCAGAGCGAGCTGCCTACACAAGTCTCCTCCTTCGCGCTGGCGTCTATGCCCTCAGCTTTCTCTCTGTGGCCACCGGCAGTGTCATCTATTACCAGGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000854:ENSRNOT00000001139:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTGAGCAACGTGACC
R:
AGGAGACTTGTGTAGGCAGCT
Band lengths:
257-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]