HsaINT1025286 @ hg38
Intron Retention
Gene
ENSG00000278570 | NR2E3
Description
nuclear receptor subfamily 2 group E member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
Coordinates
chr15:71813389-71814117:+
Coord C1 exon
chr15:71813389-71813635
Coord A exon
chr15:71813636-71814011
Coord C2 exon
chr15:71814012-71814117
Length
376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTGGTGCTGCTTCTCCCCAGAGA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTGATCCTGCTGGAAGAGGCGTGGAGTGAACTCTTTCTCCTCGGGGCCATCCAGTGGTCTCTGCCTCTGGACAGCTGTCCTCTGCTGGCACCGCCCGAGGCCTCTGCTGCCGGTGGTGCCCAGGGCCGGCTCACGCTGGCCAGCATGGAGACGCGTGTCCTGCAGGAAACTATCTCTCGGTTCCGGGCATTGGCGGTGGACCCCACGGAGTTTGCCTGCATGAAGGCCTTGGTCCTCTTCAAGCCAG
Seq A exon
GTAACTGAGTCTCTGCCCAAACCTTGAGTGGGAATTCTGGTGACTTCCATCTGCCTCTCACTCTCCCTCCACTACCCCCATGTGTGCAGATGTGTGTAGGCCTCTATCCTGGGGGGTGGGAGGAGAGTGGTGAGGCTGGACTCCCTTCTCCTTGGGGCCACTCCTGGTTGACTGTGAGGGGACAGGGCAGGCTGGGAGCCCCTGGGAGACCCTGAGCCCCAGCCGGAGCCCCTGGTGGCTCCTCTGGGCCTGGCAGAGCCCACCCCACAGGGCCCCAGGTCCATGTCTGCAGCCAGAACCCTGGGCCACCACTTCATGGCCAGCCTTATAACAGCCGTAAACCTGTGCTAAGCTCACTGGTGCTGCTTCTCCCCAG
Seq C2 exon
AGACGCGGGGCCTGAAGGATCCTGAGCACGTAGAGGCCTTGCAGGACCAGTCCCAAGTGATGCTGAGCCAGCACAGCAAGGCCCACCACCCCAGCCAGCCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278570:ENST00000617575:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(40.2=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(21.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCCTGCTGGAAGAGGC
R:
GTGGTGGGCCTTGCTGTG
Band lengths:
336-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains