HsaINT1025923 @ hg38
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7689924-7691400:-
Coord C1 exon
chr11:7691269-7691400
Coord A exon
chr11:7690014-7691268
Coord C2 exon
chr11:7689924-7690013
Length
1255 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTATCATACTTATACCCAGTAT
3' ss Score
2.34
Exon sequences
Seq C1 exon
CTCGGCTGTGTGGCTATGATGTCCCCACCCCTGTGCTGAGCCCCTCCAGCATCATGCTCATCAGCTTCCAATCAGATGAAAACGGGACCTGCAGGGGCTTTCAGGCTACAGTCTCCTTCATTCCTAAAGCAG
Seq A exon
GTAAGAAGATAGAGTTACCAACTCTTTGGTTCCCAGTTCTAATCCTTGTGATGTGAATTAGAGGTCTTTAGAGCCCAACACAGAGACAGTCGATTCTCACTATCTGCAGTAATTACATCCTATCAAGTCACCATGGACACTGAATAAGAGAATACTCAGCCATCCCTCCTAGGAAATGTACAAGGTTAGGTGCCTTCAAGGTACATTTTCATCAGCTGATCAGTACATAAACTTGTTTTATGTGTGTTTCTGTTTAAAGATATGTTATTTAATATATATTGCTGGTTCATTACAATGAATTCACGGCCATTAAATTCATGGCCAACAGCACTATGACTCATGTCTGAACAAAGCTTATCTAACACGTGTGTTTTCTATGTGAGGCACACCACAGAGTTTTGCACTTAGGAACACTAGACGGCACTTCAGCACTATGCTTGGGGCCATTTTAAAGGTTGAGGTCACCAATAAAAAGAACAGAAATGAAAAAAAAGTGCCACTAAATAGACCATGAAAAGGACATTTGTTTATAGGATGACGGCTGAAGCAAGAAGGCAAAATATTGCCTTGTTTTACCTCGTGTGGAAACGTGTGTCTAACAACATGTATTTTTTGTCACTCTTCACATGCCTATGAATGATCCTGAGGACAACATGAGTATCACTTTTGGAGCTATAAATAATTTTTAGTGAGTAGGTGAATTCACGTATAGGGAGTTCACAAAGAACGAGTGACTGTATGTCTGAATCCTGATGGCCAATCATTACTAGATGTGTAATCTTAAGAGTCACCTCAGACTCATTTTTTTCAACCCTACTAAGGGAAAACAATGCATCCCTAATAAGAATGTAGTGAGGATTAAATCAGATAAGATACACTTGGCCACAAGCAAGTGTGCAGTACATAACAGAGACATAGAAACATGAAATATCTTCACCAGTTCCAGGCCCTGGACATTCGAACTACCTAACCAGCTTCCTTACACATTCTCATACCCATGATTCTTCTTTCCAAACCCCACAAAGCCAATTATCTGCTTTCCAAGTTGTTCATTCTTTTTAGGTATTAAGCAGCTGCAGATGGCAAAGCCAGGTTATAGTTAAAATGCCCCACTCCTCATTTGAAATACCTATAGAGTCTAGCTGGCTGAGGTGCCCCAGAATTCTAACAATAGCTTCATAAATCATTTTCTGATAAATCTCCAACCCTGGCTGTCTTTGTGGAAACTGAGTAATTGTATCATACTTATACCCAG
Seq C2 exon
TATACCCAGATTTAAACATCTCCATATCAGAGGATGAATCAATGTTTCTGGAGACATGAGATGTGCCAAATGGAGAAACCAATGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378:ENST00000533663:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.6=82.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGTGTGGCTATGATG
R:
TTGGTTTCTCCATTTGGCACA
Band lengths:
214-1469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains