HsaEX7005821 @ hg38
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7689438-7691400:-
Coord C1 exon
chr11:7691269-7691400
Coord A exon
chr11:7689924-7690013
Coord C2 exon
chr11:7689438-7689602
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTATCATACTTATACCCAGTAT
3' ss Score
2.34
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTCGGCTGTGTGGCTATGATGTCCCCACCCCTGTGCTGAGCCCCTCCAGCATCATGCTCATCAGCTTCCAATCAGATGAAAACGGGACCTGCAGGGGCTTTCAGGCTACAGTCTCCTTCATTCCTAAAGCAG
Seq A exon
TATACCCAGATTTAAACATCTCCATATCAGAGGATGAATCAATGTTTCTGGAGACATGAGATGTGCCAAATGGAGAAACCAATGTTTCTG
Seq C2 exon
GCCAAGGGGCACCAGTGACTGTCAGTAAACCACCAGAAGCTAGAGGAGAGGCTTGGGGCAGACTCCTCGTCACAGCCCTCAGACAGAGCCATCCCTGCTGACACGTTGATCTTGGACTTCTAGCCTCCAGAACTATGAGACAATAAATTTCTGTTGTTCTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-'17-17,'17-16,20-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.6=82.2)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGATGTCCCCACCCCTGT
R:
CCCAAGCCTCTCCTCTAGCTT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains