GgaEX6036826 @ galGal4
Exon Skipping
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6860277-6862662:-
Coord C1 exon
chr5:6862476-6862662
Coord A exon
chr5:6861011-6861080
Coord C2 exon
chr5:6860277-6860472
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCTTTTTTTTTTGAGGGA
3' ss Score
-0.58
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATGATGTTTGTGGAATGCCTTCGAATCAGCCGAGGTTCATCTTTAGTAGGATAATTGGAGGTGAAGAGGCTGTACCACACTCATGGCCTTGGCAGGTCAGCATACAAATTTCAGATCAACATATCTGTGGAGGAGCAGTTCTTGCCAAAGAATGGGTTATCACAGCTGCTCACTGCTTTAATTCTAA
Seq A exon
GGAACTATACAGAGACTTATGGATGGTGGTCACAGGAATTCATGATCTTACAGAGCAAGAATACAGACAG
Seq C2 exon
AAAAGATCAGTAAAGCAGTATATTATACATCCAAGCTTTAACAAGACCACTATGGACTCTGACATCGCTTTACTGCAACTGGCTGAGCCCTTAGAATTCAACCACTATGTGCATCCCGTGTGCCTCCCTGCAAAGGAAGAAGTGGTTCAGCCCTCCAGTGTATGCATTATCACAGGATGGGGAGCACAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-'20-21,'20-19,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=71.4)
A:
PF0008921=Trypsin=FE(9.8=100)
C2:
PF0008921=Trypsin=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTATCACAGCTGCTCAC
R:
CTTCTTCCTTTGCAGGGAGGC
Band lengths:
177-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]