GgaEX6036826 @ galGal3
Exon Skipping
Gene
ENSGALG00000005318 | F1NZZ9_CHICK
Description
NA
Coordinates
chr5:8354655-8357040:-
Coord C1 exon
chr5:8356854-8357040
Coord A exon
chr5:8355389-8355458
Coord C2 exon
chr5:8354655-8354850
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCTTTTTTTTTTGAGGGA
3' ss Score
-0.58
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATGATGTTTGTGGAATGCCTTCGAATCAGCCGAGGTTCATCTTTAGTAGGATAATTGGAGGTGAAGAGGCTGTACCACACTCATGGCCTTGGCAGGTCAGCATACAAATTTCAGATCAACATATCTGTGGAGGAGCAGTTCTTGCCAAAGAATGGGTTATCACAGCTGCTCACTGCTTTAATTCTAA
Seq A exon
GGAACTATACAGAGACTTATGGATGGTGGTCACAGGAATTCATGATCTTACAGAGCAAGAATACAGACAG
Seq C2 exon
AAAAGATCAGTAAAGCAGTATATTATACATCCAAGCTTTAACAAGACCACTATGGACTCTGACATCGCTTTACTGCAACTGGCTGAGCCCTTAGAATTCAACCACTATGTGCATCCCGTGTGCCTCCCTGCAAAGGAAGAAGTGGTTCAGCCCTCCAGTGTATGCATTATCACAGGATGGGGAGCACAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=71.4)
A:
PF0008921=Trypsin=FE(9.8=100)
C2:
PF0008921=Trypsin=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTATCACAGCTGCTCAC
R:
CTTCTTCCTTTGCAGGGAGGC
Band lengths:
177-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]