MmuEX6012994 @ mm10
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107781544-107784629:-
Coord C1 exon
chr7:107784498-107784629
Coord A exon
chr7:107781970-107782050
Coord C2 exon
chr7:107781544-107781747
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTATTATGTTTATGCTCAGATT
3' ss Score
5.78
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
CTCGGTTCTGCGACTATGTGATACCCAGCCCTGTGCTGAGTTCCTCCAGTGTGATGCTCATCAGCTTCCAATCAGATGAAAATGGCACTGCCAGGGGCTTCCAGGCTGACATTTCCTTCATTTCTAGAGCAG
Seq A exon
ATTTAAATATCTCCATATCAGAGGATGAATCAGTGCCTCTGGAGACATGGGACCTACCACCTGGAGCAATGGAAATTTTCG
Seq C2 exon
ATGCAGAGAGAGACACACATACAAAACCACCATACGAAGAAGACATCGGGGAGATGCCAGCTATTGACAGTGGTCTTCTGAAGCAAGGGGAGAGGCGTGGAAAGCATTGAGAAGCATTGCAACGCTCAGAAAGAATCAACCTGCTGACACACTGGCCTTTGCCCTCTTTCCTCCAGAAATGTGAGACAATAAATCTCTGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-'17-20,'17-18,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.726
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.6=82.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGTTCCTCCAGTGTGA
R:
GTCAATAGCTGGCATCTCCCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types