HsaINT1025937 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31135580-31136182:-
Coord C1 exon
chr12:31135954-31136182
Coord A exon
chr12:31135710-31135953
Coord C2 exon
chr12:31135580-31135709
Length
244 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TGCCATGATTGTTTTCTTAGATT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TTCCTCAGGCTCTGCCAATCTTTCGTTCCTCATTCCTGATACGATAACCCAATGGGAGGCAAGTGGCTTTTGTGTGAATGGCGACGTTGGATTTGGCATTTCCTCTACAACCACTCTAGAAGTCTCCCAACCTTTCTTTATTGAAATTGCCTCACCCTTTTCGGTTGTTCAAAATGAACAATTTGATTTGATTGTCAATGCCTTCAGCTACCTGAATACATGTGTAGAG
Seq A exon
GTGCGTTGTTCTGTTTGATCTGGAGGCAAAAATCTAACAAAGCTAAAATATTCTTAATATTTCCATATTCTCTTTATCCTCAAGTGCAAAATGCTACTATAAAGGTATAAGACTTAGGTCCATATTCCTCAAACAAATACAATTGCTTTCATTCACAGTGACAGTTTAAACAGTGTATTGAGCATGGTGTTTCATAGTGATGTGTGTTCCAGTGCTATCCTCATTGCCATGATTGTTTTCTTAG
Seq C2 exon
ATTTCTGTTCAAGTGGAGGAGTCTCAGAATTATGAAGCAAATATTAATACCTGGAAAATCAATGGCAGTGAGGTTATTCAAGCTGGAGGGAGGAAAACAAACATCTGGACTATTATACCTAAGAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCAATCTTTCGTTCC
R:
AGCTTGAATAACCTCACTGCCA
Band lengths:
305-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains