HsaINT1025941 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31131351-31132328:-
Coord C1 exon
chr12:31132245-31132328
Coord A exon
chr12:31131525-31132244
Coord C2 exon
chr12:31131351-31131524
Length
720 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCCGCTTTTCCTGTTTTTAGGGG
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTGCCAAAGCCTCCAAGCAGGGAGTTTTGGACTTGCCAAATGATGTAGTAGAAGGGTCAGCCAGAGGCTTTTTCACTGTTGTGG
Seq A exon
GTAAGTTGATCAAATTTTGTGTTTCACTATGATTTGAAAATCTTGGTTGAGGTGGTCTTTAAAAATCCTTAAAATAATAGAATAGAGAGATTTTCCTAAGCTATCAATTGGAGGGAATTATTGATCAGATCATCCTCTATGTTTCCTGATGGGATCTAAAGGGATTACAGTACCGTTTCCAGACCTATATTCCCAGGAAACCTTAGCTTGGGTAGATGGTAACTAGTGTTCAGAAAGCAAGAGGTTCTTTATAATCATTAATCTGAAATATGAAATTCACCTCTTGGAGAATCGAATTGACTTTGCCTGTTAATGATGTTGGGAGTTTTCTCAATAAAAGGAGAAATTTTTGTTGTTGATACAAAAGGCAAACTTCTTTGTCTGTTATTAACATGAACATCTCTTGGAAGGGATGGATTACACTTTGTAATTCATAGGATTGATTGATTAAAAAAAACTAGCAAACAAGCAAACAAATGCATTCTCCTAACTTCCTCCTCTCTCTGGTAATGAGATTTTCAGAAATATTTTTCATAGCAGTTTAACTTCACCCTTCATGGCTGTCTCCTCTTTCAAATTGCTTCATAAAACTTTCTTTGTTTCCACCATTTAGACTCAATTTTAAATGTTACCTATTTCACTATGCCTCTTTTGTCTATAGTTATTAATGCTGAGATGGCAACTATAAACAATACAGCTTTCCGCTTTTCCTGTTTTTAG
Seq C2 exon
GGGATATTCTAGGACTTGCCATGCAGAATCTGGTTGTTCTCCAAATGCCCTATGGAGGTGGAGAGCAGAATGCTGCCCTACTAGCATCTGATACTTATGTTCTGGACTATCTGAAATCTACTGAGCAACTGACAGAGGAAGTTCAATCTAAGGCTTTCTTTCTCTTATCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=50.8),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAAAGCCTCCAAGCAG
R:
GAAAGAAAGCCTTAGATTGAACTTCC
Band lengths:
246-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains