GgaINT0105037 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79473644-79474822:-
Coord C1 exon
chr1:79474739-79474822
Coord A exon
chr1:79473821-79474738
Coord C2 exon
chr1:79473644-79473820
Length
918 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTGTATCTTTAATTCTCAGGAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
GCACAACAGTTTCTGAACCAGTGCTTCTCAGCCTGCCAAGAAATGTAGTGCAGGGATCAGCCAGAGTTTATTTCTCTGTCATTG
Seq A exon
GTAAGTGTAGTACCTAGACTAAAATTAAAAGTGAAGTACTTTTTCTTCTGTGTGGCTTCCAGTGCTATCATGTATATCTACGCAAAGCTAGAATAAATTTGAGGAGAAACTTCATCTTGATTTTAAGCAAATGTTTCCTACTTTCTGAAATGAACAACTTCTGTATTTCTTTGCCAAAATTCTCTCCTATTGTATCAAAAAAGGATAGAACAAAACAGTCAAACTATTTCCATTCATATTTCATTTCAGATGATATTGCTTCAGCTATTCTGTTCTGTGTAGTAAAACTGAAAAGGAAGCTAAAGCAGACTTCTTGAAAAAAAAATCCACATTGTTTTGATTTCTTGAAGACTTCAAAAATATGCTGTCTGCATAATTCAAATTATGCCTTTACATAATGAAAAACATTTGTCTGTTTACAAATATCCATAGAATGAGTCATCCCAGTCTGACCTACCGATCTTAAACTCATTAAGAATAATAGCTCCCCTTAATGAAAAGTTTATGAGATTCTGAACACAGACTGCTTTCTAAAAACAGTTGTTTTTCATGCCAAAGACTGTGTGGAATGTACTGGTACTGTGGAATACAGCGTACGTAGCCTATCAGCAACGTATGATCAACTGTCATTTTCACATATGCACACCAAAAGGGAAGCACACTGGAAAGGCTGGGGAATACTAACTCAGAAGGGTTGATAGCTGATTCTCATAAAATCATTCCAGTCACTACCAGTGCTTAGCTCCTTCTCAAATTTACAGTTTCTCATGTGCCCAGCATCAAAATAAAAAATTATAATATTCTTTGATTACTGTGATTATTACGGACTCAAAGACAGTGTAGTAATGTAACATAAAGCAACATATAAAACTGTGTAATAGAACGTTTGACCTGACCCCTTGTATCTTTAATTCTCAG
Seq C2 exon
GAGATATTTTGGGTACAGCATTAAGGAACATGGAAAACCTCCTCCACATGCCTTACGGCTGTGGAGAACAGAACATGGCGTTGTTCACACCCAACATCTATGTCCTGGATTATCTGAATAAGACTGGGCAGCTGACGGAAGAGATTAGAGTCAAGAGTACTGGATATTTAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTTCTGAACCAGTGCT
R:
TGTGGTTAAATATCCAGTACTCTTGA
Band lengths:
258-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]