HsaINT0135675 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9312910-9313712:-
Coord C1 exon
chr12:9313629-9313712
Coord A exon
chr12:9313087-9313628
Coord C2 exon
chr12:9312910-9313086
Length
542 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TAATCTTTCACATTCCCCAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
Seq A exon
GTGAGTCACCTTCCATTTAGTAAACCTGGGCCAAAAGAGTTGCCACTGTACATCTTATCTACGTATTTGTATTTGAATTATCAAGTTCTTGATAGCTGCTATTCTTTTTTATTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGTGACGTGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCACCAGGATGGTCTCGATATCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGATAGCTGCTATTCTTATTAGGATTCTGGAAGTCACACTCTGTGTATATAACTTTTCTCTTACCTAAATGATAGACTCTGAATATAAAGGCCATTTTTGTTAATAATGTTGGCTATTTATGAACTGAAATTATTCTGACATCTAATCTTTCACATTCCCCAG
Seq C2 exon
GTGACATATTAGGTTCTGCTATGCAAAATATACAAAATCTCCTCCAGATGCCATATGGCTGTGGAGAACAGAACATGGTCCTATTTGCTCCTAACATCTATGTCTTGAACTATCTGAATGAAACCCAGCAGCTGACGCAGGAGATCAAGGCCAAGGCCGTTGGCTATCTCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTGAGCAGTTGTCCTTG
R:
CAGTGATGAGATAGCCAACGG
Band lengths:
254-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)