HsaINT1026476 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149895183-149896502:-
Coord C1 exon
chr5:149896356-149896502
Coord A exon
chr5:149895291-149896355
Coord C2 exon
chr5:149895183-149895290
Length
1065 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGATGTGCATGTGTTCACAGGCC
3' ss Score
8.42
Exon sequences
Seq C1 exon
CAAGCGGAGCTGCCAGATGCAGATAAATACGAAATTAATAAATTTCACTTCAGTGACTTACCCCTAACAGAACTGGAGCTGGTAAAATGTGGAATACAGATGTATTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCACAAGAG
Seq A exon
GTGAGGTCAAAACAAATATATATGATTTCCCTTTTTAATTTTCTTTCTTGCTTGCTTTAAAAAAAAGACTCAATCTGTAAACTACCTTAAAAAGAGTTTACTCTCAGTATTTAGGATTTAAAGAATTAGTCATGTTGCACAGATGAGTCATTTATAAGAAAAGAGACACGCTGTTCCTCTGTGTCCTGTGAAGTGTGATGTTTTGGGTGCGTTGGTTTCTTGCAGTGGGTTCTGAGGTACTAAGCCCTGAAGGCTGGGAATAGATATGCTGCAAAAAATGGGTCCTATAGTTAAATGAGGGCAGAAAATGTGGGCTAAACCCATTTAAACAGGGCTCATTCCCTGCAGGATTCCTTACTAAGGTTTGCTGTGAGTCTAGGGTCATGGGGGACGGCAGAGAAGGTATGTGTGGGAGGCAGTGGGATATGATATGCAGAATTGCCTGAACTTGTTTGATTTTGATTAAAGCAGTGGTTCTCAAAGTGTTACCCCAGACCACATCCACACCACCTAAGAACTTATCAGAAATTCACATTCTTCTTTTTCTCTCTCTCTCTCTCCTCTTTCTCTCTCTCTCTCACACACACAGACACACACACACACACACTCCCAGCTCTGATAAATCAGAAACTGTTTTAACAAGTCCTCCAAGTGAGTCTCATGCACACGCAAGTTTGAGAACCACTGGATAAAAGAGTCCTTTTGTTTTTGTTTTTTTTTTCCCTGTAGAGCCCTTGTTAGCTTCTCCAAGGATAGTTGCTCTCCAGGGCACAGTTCGGGAATTACTGATGAAGCTCAGTCAGAGGAATGATGCATGCTCACCTCGTTTCCTAACAACAACAACAACATCTTCTTAGTATTTAGCATTTAGTATTTGCAAAGCACTTTCGCAGCATGATTGCATCTAGTACAAGCTCTCACCTCCTGGTCCAATGATGGGGTTAGAGTACCTCAAACCTCAAAAGAGAGGGCCATGGGCCATGCCTTCTTCATATTTTTGTTATTCCAACCCTCATGAGACCATTTCAGGTGTGTCCTGCCTCACTGATGTGCATGTGTTCACAG
Seq C2 exon
GCCCTGGTGCGGTTCATGTACTCCCTGAGTAAGGGCTACCGCAAGATCACCTACCACAACTGGCGGCACGGCTTCAACGTGGGGCAGACCATGTTCTCCCTGCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0023314=PDEase_I=PU(7.2=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGCAGATAAATACGAAA
R:
CAGCAGGGAGAACATGGTCTG
Band lengths:
241-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains