GgaINT0066434 @ galGal3
Intron Retention
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52380160-52381188:-
Coord C1 exon
chrZ:52381042-52381188
Coord A exon
chrZ:52380268-52381041
Coord C2 exon
chrZ:52380160-52380267
Length
774 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
ACCCTCCTTCCCAATTTCAGGTT
3' ss Score
11.91
Exon sequences
Seq C1 exon
AAAGAACAACTCCCAGGGCCCACCAAGTTCGAAATCTATGAGTTCCGATTCTCCGATTTTGACTGCACTGAGCTGGAGCTGGTGAAGTGTGGCATTCAGATGTACTACGAGCTTGGCGTGGTGAAGAAGTTCCAGATCCCACAGGAG
Seq A exon
GTAACTAATCCTAACCCAGGACCCCCACCTCGTTCGTGAGTCTGGAGCATGGCCACTTCTGCTCCATACTGTGGTGGGAAGCTGAGTGCTCTGTGGGCTACCAGTATGGGTTTGCTGCTGGGCCTCTACAGACTGAGCCTGCACCGTGCCAAATCTGCCTACACCGTTATCGAACCTTATTCGACCCCAAAGTCCTCAACTTGCAAACTCAAGGCTTTTTGCCACGGTCCGTGCCCGTCAGACTAGGAAAACTTTGTTTTCGCACCCTGTCTCCTCGAGGGATGTTTCAGCTCATGCTGTGAGTTTTATCCCCATCTAGCGGGGCCTTCGGGTTGCTGCACTGAGAGCCTCCTGCCTCACGTCCCCCATACCTGAAGGGCCGGCAGGGGAGCAGGAGGGAAACGAAAGCTTCTGCGCAAGAGCTTGTGCTGCTTGTGCTCTGCTTGTGCTGCTTACCTACTGCACGAGTCAGCACTACGAGCATTCAGAATGTCCACTCTGGAATGACACGCTCCTAGTACAGATGTGAAGAACAGCCATTCTTTGCTGCCCCTTTGAGATTTAAAATAATGAATGCTCTCTTATTCCCTCTCCAATGGAAAAAAAATGGGGTAAACATTCCATCTCTACAGACCTACAGAGCCATCCCTCTTGAAGGTCTGACCCTTATCCATTATTTCTATCCATTGTCTTTATTCCAAAAGCAGCAGCTGCCAGCTTCACCCACAAGCCAGCTGTCATCAAACAAACTAACACCCTCCTTCCCAATTTCAG
Seq C2 exon
GTTCTGGTGAGGTTTGTGTACTCTGTCAGTAAGGGCTACCGGAAGATAACGTACCACAACTGGCGCCATGGCTTCAATGTTGCACAGACCATGTTCACACTTCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0023314=PDEase_I=PU(9.0=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACAACTCCCAGGGCCC
R:
ATGAGAAGTGTGAACATGGTCTGT
Band lengths:
254-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]