HsaINT1026485 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149857956-149863266:-
Coord C1 exon
chr5:149863119-149863266
Coord A exon
chr5:149860972-149863118
Coord C2 exon
chr5:149857956-149860971
Length
2147 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTTTTCCTGTTTCATTGCAGCAG
3' ss Score
10.42
Exon sequences
Seq C1 exon
GAATTCTCCCGTTTCCACGAGGAGATCACCCCAATGTTGGACGGGATCACCAACAATCGCAAGGAGTGGAAGGCGCTTGCTGATGAGTACGATGCCAAGATGAAGGTGCAGGAGGAGAAGAAGCAGAAACAGCAGTCGGCCAAGTCAG
Seq A exon
GTTTGTGGAAGGGGGAAGCAGGGACTCCCACCACCCCACTCCCTGAGCACTCAGTGTCTGCGTCCTGCCTCAGAGACTCTTACACGGAGTCTCATTCAGGCCTCCTGATGGCCAATACTGTCCCCATTCTGTGTGTGAGAGCACCAAGGCTGGAAGAGACCAAGTCACACAGTAAGAGACAGAGCCCGGTTCCCAAGATTGAGGCTGAGGAACGATCCAGGCCTCCCAGCAAGTGCCCCGGCAACCAACATAGCACAGACTCTGATTTTAGGGCTGTGGACATATGTCCCTACCCTGGGACAAAGGAGAAGATCTATAATTATTGGTTGGAAGGAATTTTATTTTTATTTATTTATTTTTTGAGCCGGAGTCTCACTCTGTCTCCCAGGCTGGAGAGCAGTGGCACGATCTCCACTCACTGCAACCTCTACCTCCCAGGTTCAAGCAATTCTTCCGCCTCAGCTTCCTGAGTAGCTGGGATTACAGGCACCCAGTGCCATGCCTGGCTAATTTTTGTATTTTAGTAGAGATGGCGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAAGTGTTGGGATTACAGGCATAAGCCACCGCGTCCGGACTTGGAAGGAATTTGAGGCCCTATTTCCAGCCTTCTGTCTGATGTTTGAATCCTATCTATACCATCATGAGCTTATGCTTGTATACCACCAGTGACAGAGGTCTCACTATCTTATATGACATCCTCATTCAGTACCACTATTAGAAAGGTCTTCCTAGAACTCAAATTGTTCCTTGTTGAAGCTTCCACTTAGTGGTCATGGTTCTGCCTTCAGAATCAAATGGGATTTGTTTGTTCTAACTCTTTACTACTGACAGCACTGCCCCTCCCCCAAGTCATTTCTTTTACTGATTGTGTGATCTGTTTCCTCACAGGACATGGCATCTTGTCCCTCCCTCACCCTGACTGCCCTCCTTTGCACACCCATCCCTCTTCACCCATGGCTCTTACACATGGAAAATGTCAGGGCCTCAGCTCTGCTCTGGGCAGCGTGGGTTGATTCTAAATGGGCAGCTGCAAATGTAGGGGCCACTTAGAGTTTTGTAGTTTATGCTTTGCACAACTCCGGGGAGTGTCCTGTACATCACAGATGTGTATAGCTATTTTGATTTTCCAGAAAAATGGCAGTGAGGTATCCTGGGAAATAAGTGCATTTTTCTAATTTGTACAAATTGTCTTTTGGGCAAGTAGTAAATCAGTGCAAATTTGTGGCCTTCAGATAAAAAAATACAGATTTGGCTTACATTTTTTTCTCCTTCTTTTTTTTCTTATAGCTAGAGAATCAGTACCAACATTTTTTTAAATGTGAATTTTTGGGCCACATTTTAAAATTGGAATATTTAAGATTTAAAAAATCCAGATTTACAGCCTCTTTTTCTTTCTTTTTTGGAGATAGAGTCTTGCTTTGTTGCCCAGGCTGGAGCGCAGTGGCACGATCATAGCTCACTGCAGCCTCAAATTCCCGGCCTCAAGCGATCCTCCCACCTCAGCTTCCCTAGCAGCTGGGACTTCAGGTGTATGCAACCATGCCTGGCCAATTTTTGTATTTTTTTGTAGAAACCAGGTCTTGCTATGTTGCCCAGGTTGGCCTCCAACTCTTGGGCTCAAGTGATTTTCCTGCCTCAGCCTCCTGAAGTGTTGGGATTACAGGCGTGAGCCCTGTGCCTGGCCCAGCTTTTCTTTCTAAAAGAGTAAAAAGGTAAGATCTGGCCACACCAGTCTATCATTTTTGCATGACAACAATTGGCTGAAGCCGAGTGGCAACTGCCCCCTTTAGATGAGACAGAGGCTGTCTCTAGTTTGTCATGTTCACAGCTCCCCTGGTCTCCCAGACATTGGTGCCGAGTACTGGTTCTCACTTATCATCATCCTCGTGCTGCTATTTTTCTTAGAGAAATGTTCTGTTTCCGTGATTCTCCTCACACCTGGTTTGCCTTCTGCATGTGTTGTTATCTGTTGGCCACTGAAAGCCTTTGAGTTTGCAACTCTTGGTCCAAATTAGGTCAAAGGGGAAGCCCACTGCAGCCTCTTGTCACCTGGTGTGTTCTTTTTCCTGTTTCATTGCAG
Seq C2 exon
CAGCCGCAGGAAATCAGCCGGGGGGAAACCCCAGCCCAGGGGGTGCAACTACATCCAAGTCCTGCTGCATCCAGTAACACCACTGGGGATGTGCTGGCTGGACGGCACCACCCTTTCCTGGGAAGAGATGACTCAAGCCAGTGGAAGACCACACACCTTGAGAAGTAGAAGAGTCATAGGATTTGAAAGCTGTTAGAGAATTTAGCTTCCAGGACTGTTCAATCTTTTGGCTTCCCTGGGCCACATTGGAAGAATTGTCTTGGGTCACACATAAAATACAGTAACACTAATGATAGCTGTTGAACTTAAAAAAAAAAATCGCCAAAAAAAAAAATTTCATAATGTTTTAAGAAAGTTTATGAATTTGTGTTGGGCCGCATTCAAAGCCGTCCTGGGCTGCATGTGGCCCACGGGCCGTGGGTTGAACAAGCTTGGCTTATACCTTATCCAGTGGCTTTTAAACATTCTTTTAGTCTTGAGAACTGCCTATTGAGCTAAAACCAATATTCTAGCTTTCATAGACATCAGTTAAACATTTAATTACATTTAATTAATGCCAGATTCACTGGCTTGCTTAGAATCATTTTTGTTCTTATACTTTCAGTTAATGTATTGTAAAAATTTTCAATCATTTTCAAAAGTAGAGAATTGTACGTTGAATCCCCACATACCCATCACCCAGATTCCAATATCAAGATTTTGCTACATGCATTTCGTCTGTCCTTTTTACATTTTCTTTTCAATTTTTTTTCTTACCTGAAGTGTTTAAAGGCAAATCCTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTCAGGAGGCTGAGGTGGGCAGACTGCATGAGCCCAGGAGTCTGAGACCAACCTGAGCAAAATGGCAAAACCCTGTCTCTACAAAAAATACAAAAATTAGCACTCACCTGTAGTCTCAGCTACCTGGGAGGCAGAGGTGAGAGGATCTCTTGAACCCAGGAGGCGGAAGTTGCAGTGAGCTGAGATCATGCTACTGCACTCCAGCTTGGGCGACCGAGCGAGACTCTGACTCAAACAAAAGCAAAAGAAAAGGCAAATCCCAAACATATCATTTCACACCTCTACTATCTCATCTTTAAAGAAATAAGTATGTTTTCTAACATAACCACATCACTGGCCCATGCAACCAATGCCTGCCTAATACCCAGCTGTGATCTATGCTTTGATGGGCTGCACAGACCCCAAGCTTCAGCAAAGGACTTGGGACCCCACCAGCTTTGAGTGCTGTTGACAGACCCTTAGTATCAACCCCATCAGGTGTTACTGCAGCCTTCCCCAGGGTGGCCTACACCCAATGACTGATCCATGCCAGGTGGAGAGGCCTGGCCATCTTGGCTGAGCATGGGATAACTGTGCAGGGCTGTTCCAGCTCCACGACTCCTCGTGGGGTCCACTAAGGCTGTCGCTGGGCTCACATCCCAACTCGACTTCTCCCTCTGCCCACTCCTATTTCCTTCCCTTCCCCAAGCATCGGTCCCCAGGGCACTGCTTAATAAGCATCCTGCAGACTAAGTCCATTTTAGAGTCTGCTTTCTGGGACACCCAACTTGTGATGCCAGCCCTTAATCAACCTTCCTTCATTCTCATGAACGTTTTCAATGGTTGGCTTGCCTGAATCTGATCCAAACAAATTCACATATTGAATTTAGTTGTTTCTTTTTGTTGGTTTTTAGAAAAAAGAAGATGTACTTTTTATTCTTGGATTTTTCATTGATTTCACAGAGTATAAATTAAGTCAGATTATTCTCAATTCCAGAACTTCTGTTTCTTAAATTAGCAGGCATTCTGTTGGTTTAAAAAGATAGATGTTGGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGAAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAAAAAGATGTGGCAGATAGAATTTCTCTCTTTCTCTATCTTTCATGACGAGGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTATGACCATAGCTCACTGGAGCCCCAGCTGCCCGGGCTCAAGCAATCCTCCATCTCAGCTTACCAAGCAGCGGTGACCACAGGCATGCACCACCATGCCCAGCTAATTTTTTAAAACCTATCTTTGTAGACATGGGGTCTCATTCTGTTGCCCAGGCTGGCCTCAAACTCCTGACTTCAAGCAATCCTCCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCACCTGGCCAGGACTTATTTCTTTTAAACCGAATCTAAGTATGTTCTGGCAAGTATGCAATACCTAGCGGAATGCACTGGCCTGATCAGCATTCATACCATAGTAACTGATGTTGAAAACAGCACAAATAAACCAGAAGTTGAAAATGGCAATAACATGCTAAAAATTTGCAAGTCAATTTGTTACACTTGTCCAAATCTTGATTTTTTTTCCTTCTCTATCGTTCCCCCCCCACCACCAGCTTTATGGAGGTATAATTAGCAAATAAAAAGTATACATATTTAAGGTATACACTGTGATGTTTTGATATACATTGTGAAATGGTTACCATAATTAAGCTAATTAATATATCCATCACCTCACATAGCCATGGTTAAGTTTCTGAAGTCTCTTTTAATCTACAAAGTACTCCTTCCTTTTTTCCATTGTCATCACCTTGCAGAAACAGAGTCAGTTTTCCCACATTCTGTATTTATCTGTTTGTTTCTTTGTGGCCGCATGTAACACATTCCTCTGTCTCATTCTAATAAATGGACATTAGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(7.6=38.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains