HsaINT1026583 @ hg38
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70146134-70148553:+
Coord C1 exon
chr16:70146134-70146228
Coord A exon
chr16:70146229-70148463
Coord C2 exon
chr16:70148464-70148553
Length
2235 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGCTGCCTTTGTCCCTGCAGGAG
3' ss Score
12.28
Exon sequences
Seq C1 exon
CCCTCAATCTGATTGGCCCTCGAGCTGTGGATGTGCTGTCTGAGTTGTCCTATGCCCCTATGACTCCAGACCACTTCCCAAGCCTCTTTTGCAAG
Seq A exon
GTAAGTGCTGATAAAGTTCTGTTTCTTAAATGGGCAGAGAATGTGTCTTTCATAGCGGTGGCAGGTACATATTCTTACTATGGTGTTAGCACCCACAAAGAGTGTCTTGGCTGGGTGAGGTGGCACATGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCCAAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAGACCCTGTCTCTGTTAAAAATACAAAAATTAGCTGGGTATGGTCTCACGCACCTATAATCCCAGCTACTTGGGAGGCTGAGGCACAGGAATCGCTTGAACTCTGGAGGCAGAGGTCGCAGTGAGCCGAGAACACGCCACTGCACTCCACCTGGGTGACAGAGTGAGACTCTGTCTCAAATAAAAGAGTGTGCTGGCCAGGTGCAGTGGCTCACGCCTATAATCCCAGCACTTTGGGATTACATCTTATATTTATAAATAAATATAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCATGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGACTTGAACCTGGGAGGCAGATGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGGCTGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAATGTGCTGCCCTTCATTAGCAAAGAAGTGACTAAGTATATTTATTTATTTATTTATTTATTTATTTATTTTGAGACAGAGTTTCACTCTTGTTGCACAGGCTGGCGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCCACTTCCCGGGTTCAGGCGATTCTCCTGTTTCAGCCTCCCGAGTAGCTGGGATTACAAGCGCCCGCCACCATGCCCAGCTAACTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTTGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGAACCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCTTATTTGTTTATTTTTTACACTCCAAGCTTGCTTTATTTAATAAGCATTAGGATATCTTTGAAGTGGATTTAGCTTCTCTAAATGTAAAGTCTTTATGCTTTTTGGTTTCTGTAGCACTGGATTAAAATTTGAAGTTACAGGATTATGACACACACAAAAATGCCTTTCGAAGTTAGGTCCCTTCTCTCCATGCAGTGTGGCCTCTTTTCTGTACACAGAGTAACTTCTGTGTCTGTGGCATCTTCAGGGAAGAAATGGCGTAGGTGAATCTCTGAACTTCCTACATAATTTTCTTTCCTATAAGTGGCAACCACAGCTGAGTGAAACAAACTGTAACCGAATGAAAGCAATGACAACGGAATCCTCCCCAGGAAGCTGCTGATTAGAGAGGGCCAAACGGACAGACATCTTGGCCACCTGTAACGAGCAACTTCCAGGTGGTTACTGATGGAGACTCTTTGAAGTTCACCCAAAGTGGGATCCACCTACAAATTGTTTCACAGTTTTCCTTCTTCTCCGAGGCAAAGTGAAAGCAACAGAAAACTCTCCACTGTTAGCTATCAGTGGACCCCTCCCAGCGTTTGCTCTGCTGCTTGGAGGAGTGACCCATACGCTCAACACCTGGCGAGTGCTGCATCCTGTCAGCCTCCTGTGGAAGCGGTTCACTTCGGTGCTGTCCAGGACTTTCCACTTTCCTTTATAGGAACGGTGATTGCGTCAGTGGCCGCTGTTAGGGAACTGAGCTGCTATGTAACGTGTTCTGAGAATCAGAAGCCCATCTTTGACCCCAGGATAGCAGATTAATTATGTCTGTGGGCATCGGGCATCATCTTTTGTATGGCAGGCGGCCAGGGTTTGTCTGCTGATTCCCCCAGAGAAGACACTCGCCTTGTCCTCATTGTGCCTGCTACCCTCGACTAACACAAGGACCTGGCAAAGAGGAATATTTTGTGCTTGTCAAGGACTTTCCTCCACTCTCTACCATCAGCTTGGCTAAAACTCCTGAGATGGTAACAGTAGCAAGCAGAGATGTCACATAGGCAGTGCTCCATTCTCTGTGCCTCAGGACCTGGAAGTTAACCACTTTCGGGATGAAATTCTTGCCTTGACGTCTGTCTCCCTCAACAGTAAACAGAGGGTGCAGCACTAATGAAAGGTTTCCCCAGGCGTCCCTCCCTTGACAAGTAATGTGAGTGCCCAGGCTGACTGCTGCCTTTGTCCCTGCAG
Seq C2 exon
GAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGCATGACGCACACAGGAGAGCCAGGATTCATGCTCTACATCCCCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857:ENST00000288050:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(11.2=91.7)
A:
NA
C2:
PF0157116=GCV_T=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains