MmuINT0003807 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:113652143-113653595:+
Coord C1 exon
chr8:113652143-113652237
Coord A exon
chr8:113652238-113653505
Coord C2 exon
chr8:113653506-113653595
Length
1268 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGCTTTCCTTTTCTTTGTAGGAG
3' ss Score
10.54
Exon sequences
Seq C1 exon
CCCTCAATCTGATTGGCCCTCGAGCCGTGGATGTGCTATCTGAGCTGTCCTATGCCCCTATGACTCCAGATCACTTTCCAACGCTCTTCTGCAAG
Seq A exon
GTAGGTGCTAGTCATTTATTGTTTGTGATCAGTGTCTCATGTAGTGCATGCAGGTCTCAAACTTGTTATGTAGCTGGGCATGACCTTACACTTGCGAGCTTGCTCAAGTGCTGGGAATGCGGGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATGGGTTTATATGGTGCTGAGAATCAAACCCATGGCTCCATGCATGCTAGGCAAGCAGTCTGCCAACTGAGCCACATTCTTAGCAGTTCTGTTTTTTTAAATGTTAAATATGTTTCTTTTATAGTGATGGCAGGTTCATATTCTTAATATGGTGTTAATACTTAAACAGTGTTTTGACCTTTATTAAGCAAGCAAAATGACCAAGCAACTTTTATTTTTTACTTCCAAGTCTGCTTTATTTAGTAAGGATTAGGGTATTCCCTGAAGTATACTTAATGTCTTTGAATGTCAGGTATGTGTACTTATTGGTTTCTCTAGCGCCTGAATTAAACTTAAGGTGACAGTAAATGCACACTGAGGTCAGATGTTTTTTCTCCTTGCATTTGCTGTTTTGTTTTTATTCTCATAGTATATTGATAGCTGAACCCTAGACAACACACAACTAGTTGCTTGGCACACACTACACTGAATAACTGAGCGCTTTGCAGGAAGCAGTCACACAGCCACTTTGGACATGCACCATGCATGGAGAAACTTGGAAGTTTAAACCCAAGTGGAGATTTTTAGAGCAGATTGTTTAATGATTTCCTGCTCTCCCAAGCAGAGAAAACAACAGAAAACTTCCATGTTGGTGAACAGATCCCTCTACAGTCTTCTCTGTACTTTACAAATGATCCAACCTGACTGTCAAATGCCTTGTCAGAATTCATGTGGAATTGTTTCAGTGCTGTCTTGCTTGGCCTTACACTTCCCTTCATAGAGCAGTATTATATCAGTGACCCTTTCAAGGCGACTGAGCAGCTGTAACACTAGAAACTGAGCTTTTGGTCCCAGAGTGCATGAATTGTATTCTGCAGGCATTGTCCTTTATGTGTCTTACAGAGTCCTCCAGAGAAAACACTTGGTTGGTCTTCATTGTTCCTAACGCTGCTTGGCTAACTCAATGTTTTAGCATGAGCTGGTAAAGAGAGATGCTTTCCTTGGTTGTAGCTCTTCCAGGGTTAACATAGGGTGGGTACTGACAGGCTCCCCTCGGGACTCAGTCTCTTGACTGTCAGGAGGGACGAGTACTGACTGCTTTCCTTTTCTTTGTAG
Seq C2 exon
GAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGTATGACGCACACGGGAGAGCCAGGCTTCATGCTGTATATCCCCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
-4930402E16Rik:NM_198308:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAATCTGATTGGCCCTCG
R:
TCTATGGGGATATACAGCATGAAGC
Band lengths:
183-1451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: