MmuEX0034310 @ mm9
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:113652143-113656959:+
Coord C1 exon
chr8:113652143-113652237
Coord A exon
chr8:113653506-113653595
Coord C2 exon
chr8:113656777-113656959
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCTTTTCTTTGTAGGAG
3' ss Score
10.54
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCCTCAATCTGATTGGCCCTCGAGCCGTGGATGTGCTATCTGAGCTGTCCTATGCCCCTATGACTCCAGATCACTTTCCAACGCTCTTCTGCAAG
Seq A exon
GAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGTATGACGCACACGGGAGAGCCAGGCTTCATGCTGTATATCCCCATAGAG
Seq C2 exon
TACGCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTATGCCCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTTACCACGCCTTTGGAATGTGGAGGAGAATCTCGAGTGAAGTTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'16-20,'16-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(14.2=100)
A:
PF0157116=GCV_T=FE(13.3=100)
C2:
PF0157116=GCV_T=PD(25.2=90.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCTGATTGGCCCTCGAGC
R:
TTCGGAGACTTCTGAGGGCAT
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: