DreEX6067045 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50960590-50961187:+
Coord C1 exon
chr18:50960590-50960684
Coord A exon
chr18:50960794-50960883
Coord C2 exon
chr18:50961005-50961187
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTTTGCAGGAA
3' ss Score
12.57
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CGCTGAATCTGATTGGTCCTCGAGCCATGGATGTGCTGTCCGAACTCTCGTATGTGTCCATGACTCCAGAGCACTTCCCTTCGCTCTTCTGTAAG
Seq A exon
GAAATGAGCGTGGGCTACGCTAACGGCATCAGAGTGATGAGCATGACACACACAGGAGAGCCGGGGTTCATGCTGTATATTCCCATTGAG
Seq C2 exon
TATGCACTGCACGTGTATAATGAGGTGATGTCGGTGGGCCAGAAGTACGGCATCCGCAACGCCGGCTACTACGCTCTGCGGAGTCTGCGCATCGAGAAGTTCTTTGCGTTCTGGGGTCAGGATCTGGACTCGTTCACCACACCGCTGGAGTGCGGACGCGAGTTCAGGGTCAAGTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'27-19,'27-18,28-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(14.2=100)
A:
PF0157116=GCV_T=FE(13.3=100)
C2:
PF0157116=GCV_T=PD(25.2=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCATGACTCCAGAGCA
R:
TCCAGATCCTGACCCCAGAAC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]