DmeEX6000681 @ dm6
Exon Skipping
Gene
FBgn0029706 | CG3626
Description
This gene is referred to in FlyBase by the symbol DmelCG3626 (FBgn0029706). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is X:4366417..4371136. Its molecular function is described by: oxidoreductase activity. It is involved in the biological process described with: oxidation-reduction process. 6 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
Coordinates
chrX:4369174-4369790:+
Coord C1 exon
chrX:4369174-4369387
Coord A exon
chrX:4369453-4369606
Coord C2 exon
chrX:4369675-4369790
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACCTACCTAATCTTTGCCAGGAA
3' ss Score
6.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTACATGATGATTGCACCCACCATTCAGCAAACGCGCTCCATGTGCTGGATTCGGAAACACATGCCCAATCATCTAAGGGCCAAGGTTAATGTGGCAGATGTGACCTCCATGTACACGGCCATCTGCATCCTAGGACCCTACTCCCGCATCCTGCTTTCAGAGCTCACCGACACCGATCTCACGCCCAAAAGCTTTCCCTTCTTTACCTATAAG
Seq A exon
GAATTGGATGTGGGATTGGCCGACGGCATTCGAGTGCTGAACATTACCCACACGGGTGAATTGGGCTATGTCCTATATATTCCCAACGAATACGCCTTGCATGTGTACTCCCGTCTGTATCAGGCAGGCCAAAAGTTCAACATACAGCATGCAG
Seq C2 exon
GTTACTACGCCACCCGCGCCCTGCGCATTGAAAAGTTCTATGCCTTTTGGGGACAGGATCTGGACACCTTTACCACGCCGCTGGAGTGCGGACGCAGCTGGCGCGTCAAATTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0029706-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(32.3=100)
A:
PF0157116=GCV_T=FE(23.2=100)
C2:
PF0157116=GCV_T=PD(15.5=87.2)
Main Inclusion Isoform:
FBpp0070620
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCACCCACCATTCAGCAA
R:
GAACTTTTCAATGCGCAGGGC
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)