BtaEX6079218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1913263-1921287:-
Coord C1 exon
chr18:1921193-1921287
Coord A exon
chr18:1918482-1918571
Coord C2 exon
chr18:1913263-1913445
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTGGTCTCCACAGGAG
3' ss Score
10.31
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCCTCAACCTGATTGGTCCTCGAGCTGTAGACGTGCTGTCCGAGCTGTCCTATGCCCCCATGACTCCAGACCACTTCCCAAGTCTGTTTTGCAAG
Seq A exon
GAGATGAGCGTGGGCTACGCCAATGGGATCCGGGTGATGAGCATGACGCACACGGGCGAGCCGGGGTTCATGCTCTACATCCCCATAGAG
Seq C2 exon
TACGCCCTGCACGTATACAATGAAGTGATGAGCGTGGGGCAGAAATACGGAATCCGGAATGCTGGGTATTACGCTCTTCGTAGTCTCCGAATTGAGAAGTTTTTTGCCTTCTGGGGTCAGGACTTAAACACCCTCACCACACCCCTGGAATGCGGAGGAGAGTCTCGGGTGAAGTTAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'30-22,'30-19,31-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(14.2=100)
A:
PF0157116=GCV_T=FE(13.3=100)
C2:
PF0157116=GCV_T=PD(25.2=90.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCCCCCATGACTCCAGA
R:
TAAGTCCTGACCCCAGAAGGC
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]