GgaEX0003416 @ galGal3
Exon Skipping
Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1757949-1759175:-
Coord C1 exon
chr11:1759081-1759175
Coord A exon
chr11:1758382-1758471
Coord C2 exon
chr11:1757949-1758131
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTCTGATTCTGCAGGAG
3' ss Score
9.49
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTCTCAACCTGATAGGCCCCCGTGCTGTGGATGTCTTGTCAGAGTTGTCCTATGCCCCAATGACCCCAGAACACTTTCCTTCTTTCTTCTGCAAG
Seq A exon
GAGATGAGTGTGGGCTACGCTAACGGCATCCGTGTGATGAGCATCACTCACACAGGAGAACCTGGATTCATGCTTTATATTCCCATCGAG
Seq C2 exon
TACGCCCTCCACGTGTACAACGAGGTGATGAACATGGGGCAGAAGTATGGGATCCGCAACGCCGGTTACTACGCGCTCCGCAGCCTGCGGATCGAGAAGTTTTTTGCCTTCTGGGGCCAGGATCTGGATGCCTTTACCACTCCTATGGAGTGTGGCCGTGAGTTCCAGGTCAAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(14.3=100)
A:
PF0157116=GCV_T=FE(13.4=100)
C2:
PF0157116=GCV_T=PD(24.9=88.5)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCCAATGACCCCAGAA
R:
CAGATCCTGGCCCCAGAAGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]