RnoEX6060650 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43111504-43116425:-
Coord C1 exon
chr19:43116331-43116425
Coord A exon
chr19:43115020-43115109
Coord C2 exon
chr19:43111504-43111686
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTTTTCTTTGCAGGAG
3' ss Score
11.64
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCCTCAATCTGATTGGCCCTCGAGCTGTGGACGTGCTGTCTGAGTTGTCCTATGCCCCTATGACTCCAGACCACTTTCCAACTCTCTTTTGCAAG
Seq A exon
GAGATGAGTGTGGGCTATGCAAATGGGATCCGGGTGATGAGTATGACTCACACAGGAGAACCAGGATTCATGCTGTATATCCCCATAGAG
Seq C2 exon
TATGCTCTGCATGTCTACAATGAGGTGATGAGTGTTGGACAGAAATATGGAATCCGGAATGCTGGGTATTACGCTCTCAGAAGTCTCCGAATTGAGAAGTTTTTTGCTTTCTGGGGTCAGGACTTAAACACCCTCACCACGCCCCTGGAATGTGGAGGAGAGTCTCGCGTGAAGTTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'25-27,'25-25,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(14.2=100)
A:
PF0157116=GCV_T=FE(13.3=100)
C2:
PF0157116=GCV_T=PD(25.2=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCCCTATGACTCCAGACC
R:
AGTCCTGACCCCAGAAAGCAA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]