Special

GgaEX0003416 @ galGal4

Exon Skipping

Gene
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1776889-1778115:-
Coord C1 exon
chr11:1778021-1778115
Coord A exon
chr11:1777322-1777411
Coord C2 exon
chr11:1776889-1777071
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTCTGATTCTGCAGGAG
3' ss Score
9.49
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTCTCAACCTGATAGGCCCCCGTGCTGTGGATGTCTTGTCAGAGTTGTCCTATGCCCCAATGACCCCAGAACACTTTCCTTCTTTCTTCTGCAAG
Seq A exon
GAGATGAGTGTGGGCTACGCTAACGGCATCCGTGTGATGAGCATCACTCACACAGGAGAACCTGGATTCATGCTTTATATTCCCATCGAG
Seq C2 exon
TACGCCCTCCACGTGTACAACGAGGTGATGAACATGGGGCAGAAGTATGGGATCCGCAACGCCGGTTACTACGCGCTCCGCAGCCTGCGGATCGAGAAGTTTTTTGCCTTCTGGGGCCAGGATCTGGATGCCTTTACCACTCCTATGGAGTGTGGCCGTGAGTTCCAGGTCAAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0157116=GCV_T=FE(14.3=100)
A:
PF0157116=GCV_T=FE(13.4=100)
C2:
PF0157116=GCV_T=PD(24.9=88.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCCAATGACCCCAGAA
R:
CAGATCCTGGCCCCAGAAGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]