HsaINT1026617 @ hg38
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156893720-156902285:+
Coord C1 exon
chr1:156893720-156893837
Coord A exon
chr1:156893838-156902187
Coord C2 exon
chr1:156902188-156902285
Length
8350 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTCTGTTTCCTGTTTTCAGGCT
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGTCAGGCTGGGGCTCGAAGTGGGGACCCTCGCCCCGTCCTCGGCTGTCCAGTCCTCCTCCTCGCAGACCCCGGCGGTTCCTACCCCAGGCCGCAGGGGAGACGGGGCCCCAAGGCAG
Seq A exon
GTGAGTGACTGCGCGCCCCCTGGCAGGGGAGGCCCGGTGGTGCGGCCCCGGAGACCACCCTGCCCCGGGGAAAGGGCTTGCGGTCCCTGAGGTCCCCCTCCTCGACTGGAGTCTGAGGCCCCAGACCCAGGAGTGTAGAAAAGAGGGACTGATGGAGAGAGACGTGAAGGAGGGGAAGGGGACAGTGGAGGGGGCCAGAGAGGATGGGTTGGGGGTTCCCTTCCGTAATGAACATGTAAATGAGATGAAATGCTAGCGAGGTTGTTCCCTAAGCCCCTGGTCCCCGGACTTTGTGAGTCAGGGGCAGCCTGGCTCACTGCCCCCTCCCAGGGCTGGGAAGAGAAGACTGGGTGCTGTCCTTGGCTTGCAAGGGAAGTGTAGCCACAAGAGCATCGACACTGGAGCCAAGACTGCCTAAGTGCCACCCTCCACTCTGCAGCTTACTGTCTGTGGGGTCTTGGTCAAGAGGCCTGACCTCTGTGCCTCAGTTTCTCATTTCTAAAGGAGAATAATATAGGGCCTACCTCATGGGTTGTGAGGCTTAAGTGAGCAAAAACGTGTCTCCTGCTTTGAATGACGCTAGATAAACAGATTATCAGTGTCATCTCTCTGTCCAGCGGCAGGAATGTTTGAGGGAGGATGTAGGGGAAGGACCCAGGTTTGCAGGTCCCTGGCTCTCACATCTTTGCCAGTTATGAGGACTGGGGGTTCAGCTTGAGGTCCCGGGCAACTGGATCCTCAGAAAACTTGGCAGGCTGATGATCTGAAGTTGTGCTAAGGGCCAGGTGGGTGTGTGGGGGGTCCAGGAGCCCAGGCCCCAGCAAGGCAACCCTTCACCCCCACCCCCGTCTCCAGCCTCCAGTAGCTGCTCTCCACTCCCCTGTTCTGGCCTGTTATGAGTGGCCTCTCCTGGGGCTGGGCTGTGACCCTAGTCCCCGGGGACAGGAACAGCTTGTGCTGGCCTGAGGTTCCCAGGCTCAGCCAGGGCTCAGCTCGGGCAGGATTGGGCCGGGTGTCAGCTCTCAACCCTGGCCTAAGCTGGCCTTGTGCTAGGGGGACGGTTGGAGACGGGGGAGCTCATCTCTGAACCCCACTCAAAACCAGCTCATGGTATAGGGCCTGTTGTGTGTGCTTGTGAGCCAGTCATAAGCCAGGGTGTGGGCGCAGCCCTCCTATCTCCTGTGTCTCCTCCCTGCTGTGTGGCCTCTCCCACTCTTGAGGCCTCCGAAGGCCCACCCACCATGTTCCCCACTGCAGGTGGGGCTGCCATCTCTAGGAGCTGGGTTGGCCAGACTCACTTCTCTGCCTTCCTCTCTCTCCACTGGAGGATGAAGCTGAGAGTTGGCATCTGTTCCTCCACCCTCTGTCCCCCCTCAACATCTCCTATCAGACTCTCCCAGAAGAGGAAACTCACGCTCCAGGCAGCCTCATCCACCAGTCGGAAACCTGGAGAGAGATAGAAGGTCATGGGGCTGCTGTGTGCCTCCCCGCACCCGACACACACTGCTGGGGAGGAGGCTGAGGCCAGGTGGAGCCTCCACCACGGCATTCCCCAAGCCTCTCCTCTGAGGAGCCTTGGGAGCCTTGAGAAAGAGGCCTCCCAGGACTCATGGGGGACCCTGGGGTGCCATCCTAGCTTTGGGGAGGATCTTGGCTTCTGTCATCTAACCTACAGGGGAGAAGCCAGAAGGAAGAGGCAGAGAAGACAGGGAAGGAGAGAGAGAAACACAAAGACAGAGATAGAGACAGATATAAATACGGAAACAGAGGCTGACAGATGCAGAGACACAGCAGAGGCACAGACTCATTACAACAAAATGCCCGGAGGGAGAAAAGCAGGCCTAGAAAAATAGAGCAGAGACCTAGGGATAGAACAAAAAGGAGGCGGAGACAGAGGGAGAGGAGGAGAAAGTCAGAAGACCAAAGAGAAACTGTGAGGTTAGAAGGCAGCACACTGGAAACACCAGGCGAGGTGGCTCACGCCGGTAATCCCAGCATTTTGGGAGGCCAAGGTATGAGGATCTCTGGAGGCCAGGAGTTCAAGACCGGCCTGGTCAACATAATGAGATTGCATCCCTACAATTTTTTTTTTTAATTAGCTTGGCATGGTGGTGCCCGCCCATGGGCCCATCTACTCAAGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCCATGATCACGCCACTGCATTCCAGCCTGGGCACACAGCGAAGCCCTGTCTCAAAACAAAACAAAAAGAAAGCAGCACAGGCTTTGGAATGACATAGACCTGGCCCAAATCCCTGCTCCGGCTTCAGTTGCCTGTGTGGCCTAGGACAAATCACTGAACTTTTCTGGGATATTTCTTCATAAAATGGGAGGCATAATAGCACTTACTTTATAGGCTTGCTGGGAGAACTAAAAGACAGGATCTAGCCACAGCACACATTTAACGAGGCGCAGTAATTAGTATCCCAGTACCTGGGAGGTAACCCAGGGGTTACCTCCCCACACTGCTTTGTGCTTTGAAGCAGATTTGAATCCTGCTCTTGCCCCTGGCAGCCAGACAGCCCTTGGCAAGGCATTTTACCTGAGACCCTCCACTGTGCTGCCTACCAAATGGGGATGACAATCACCAGCACCTTCCAGGGTGGCGGCGAGGGTTGGGACTGGCACTGGCGACAGCCTGCGGGAGGGGTTGCGATTGATGTGTGAATCAGGATCCCTGCAGGTGAGTGGGCCCTGGGGCGTAGCCCGCTCACTGCTGGTGGGTGCTCATGCCCTCCCACTTTTGCCCTCCGTCCTACCCCCATGAATTGGCACCTGGGGCCCAGTCCCTCTGTGTAGCGGGAGATGTGTGCAGTGGACAGTGAGGGGGTGTTGGCCCTGGATGGGGAGGCACAGGATGAGGGCTCAGGCGGTGTGGGCATGCCCCTCCACCTCCAGGTGACTCAGGGCCTGGAGCTGTTGTGCACTCATCCCATAGGAACTTGGAGGCCGGCCCTGAGGAATTCCTGCTGGAGGTCAGGAGGGCAAGTCTGGAGCCGCCTTTTGCTTTGTAACGTTGAAAAGTTCTTTCTGCATTCCACTTTCCATCATCTCATCAAACACGCACCTCATTGTGTCTTGAGGGCCCCGAGACAAGGGCCCAGCTCTACTGTCTGGAGTACGGGGAGAAGCCACAGCTTCTGAGCATCTCTCCCTCTCTCCCATTCCTGGGAAAGTCAAGGAGCACTGGAGTCAGAAAGATTTCAGGGTGTATCAGTCCATCCACTCCACACAAATGTTTAGTTATTGCCTGTTGGGTGCCGGGCATCCTGGGTGTAAGTGCTGGCCAGTCCTGGGGTTAAAGTGGTGAGGAAGGCAGAGAAGTGCCCTGTCCCTGGGGAGCTCCAGTCCAGTGAGGCAGACTGACTTTAATAAAAGCATAATGACTCATAGGATGGGAGCCGCGAGGAAACACCCAGGGGGCACCCAGACCCGCTCACAGAGCCTTGGAGAGGAATAAGATTTGAGGGAGTCCAACCTGGTGGGGAAACCAGACTCACAAACCAGCAATCACAGATAGGGTATCCATCAGCCTAATCAGCCCAGCAGACTTGGAGTACGTCGGGGGCTGTGAACCCCTGGGTTGGCCTGGGTGAGTTCCGCTTGCTTCCAGAGGAGGTACACTGGTGCCAGGACTTTGGCTGGGGTTTGGGGAGGTGTGGAGCCTCCAGGGACAGGTGCATGTCCAGCTGGGAGCCAGCCTCAGGGCATTCAGGGGGAAGAGCAACCCCCGGCCTCCTTGAGGCCACGCGGGTCTGTGGTGACTGTGTGTTCCTGAGAGCCTGCAGGAAGGCCTGGAGAGCAGGGAGGAGGGCGTGAGCCTGGAGCCACTGAGGGGCTTCTTGGAAGCGGCTGGCCTTGAGGCTGTGTAGAACCTGGGCATTTCAGGGGTGGCCTGAGCCATGGTGGCGGTGTGGTGAGAGGCATGTGGGGTCAGCGGCTGTCCAGTGTGATGGGAGCGCAGGGGTAGAGGTAATGAAGCTGGACCCCCTTGTAGGGGCTGGCCCCCTGGGGGTTCTTTCTTGGGGTGTAGGCAGCCACAGAGTGGGAGAGGGGGCAGTGGCCAGAGCACTTTCTGAAGGTAATCTCGGGGTGGCGATGAGCAGGGTGGGCCTGAGGGGGCACTGCTCCCTAGTCTATGTCACCCAGGGTTTACCTCCCCACACTGCTTTGTCCTTTGAAGCAGATTTGAATCCTGCTCTTGCCCCTGGCAGCCAGACAGCCCTTGGCAAGGCATTTTACCTGAGACCCTCCACTGTGCTGCCTACCAAATGGGGATGACAATCACCAGCACCTTCCAGGGTGGCGGCGAGGGTTGGGACTGGCACTGGCAACACCCTCTGGGAGGGGTGCGATAGATGTGTGAATCAGGATCCCTGCAGCTGCCCCATTTCCTGATGAGTAAACAGGTCGGACCTAGGACCCTCTAGCTTCTGTTTCCTGAGCCACAGAGAACACAAGTCCAGCCCCTCACCCCTGCCCCTTTCCCGCCCAGCCTCTGGCGCACTCTGGCCGCATACGCAGGCTTCCTGTTTCTCCATCCGGCAGACATGCCTGGCGTGCCGAGGGCCTGGCCCCGCTGGATATAGGCAGTGCTCTGTGCTTCAGTGTGCAAGCGTGTACATGGGTGTACTGGGTAGCCTGTGGAGTGCAGCAGGCTGCTGGGGGAGCTCCCTGTGTAGGGAGGGAGGGGAGAAGTCTTTGGACTGCGATCTCACTGCTGGGTGGGAAGGACTAAGTGATCCTGTCTCCATGGCAAAGATAGGTTAGAAAAGGCCACAGAGAAACAGACACAGAGACAGGGAGACAGACAGAAAGACAAGAGAGATACAGGGCAAGACAACCTTAGCACCAAGCTAAGACGCATGGCTTTAGTGAGTGGATTGTAGCTGGAGTTCAGCTTCCACTCTGTCCTTGAAAGTGGATGCTGTTATGCAGTAAATACACCGTGCAACTGTACATGGCAGCCTTAGTATAGGAACGGAAAAAGAGAGGCAGGAAGACAGAGACCAAGAAGCTGATGAAGGAAGGGGATGGGGAAAGGCAGATAGCAGAGTTTCTGATGAAGAACAAGACAAAAGTCCAAAAGGAAGAGGCAGAAACCCTGGAGCTTGGAGGATTCTGTTTTTGCATCAACACACATCCACGGAGCAGGCTCTAGTCTGAGGTCTGAGGTCTGAGGTTCTGTTCCAGAATGGTCACTGGAACCAGCAGTTCCAACCTTTGCAGGGCCCTGAGAGATGGCGGGGAGTGCTAGTCTCCCATTTTACAGATGAGGAGATGGAGGATCAGAGGACTCAAGTTATGTATTATAACTCAGGTTACACAGCTTGTAAGACAGAGATAGGACTAGAAGCTTTGTACTCCAGGATAGGAAGTGATGAGAGAGAGAGGGAGATGGAGAAGAGAGGAGGGGGCAGTCGGACCGAGCAAGGAACTAGGGTTGGTGCTTAGGCCCAGGGCTGGGGGAAGCAGAATTTAGGCATTCTGCCTTGTCAACCGCATCTGGCTTGAAGATGCACCTGGCGGGCAGCCCATCGTTTTGGGGGATCAGGTTCTCGGGGGAGCCTGGCCCCCTCCTGCCCCCACTTCCTTTCTCTCTGTCAGCATTTGCGGCCCCATTCCCATTCCCGGATCATCCTGGGGGTTCTTCAGAAAAAACAAGAAGGTTTTTCCTGGAATTAATACCCAAAGGCGCCAAGGGGAGGGCGGATGGGGGCCACATTGGGTGCAAGAGGAGGAGTGGGACTGAGAATGCTATCATGGAGACAGCTAATGTTAACTGAGCATATTAGGTACTGGGTCTAACTGCTTTATCTAGATCAACTCATTTAGTCTGCACAGCGACCCTACAAAGGAAGCACTAATCTTATCCCCATTTTCTAGGTGAGGGAACTGCAGGCTGGGATTCACACCCAGGCTTGAACTTGGGCAGGGGTTGGGGGTGCAGAGGTGAGGGGTTATCCTATGCTACATGACTTCCCAGAGAAGCTGGAAGGGAGCCCGTGGGGAAGTCCCTTCTGCTGTCTCACTTCCGTCACCCTTACTCTCTGCTTTCTATAGAAATGGATCCTCTTGTCCACCAGGAACTCTAATCCCCCCCACCCCTGCTCCCCTAGAGCCCACACTCAATTCCTTCCTCCTAGGAGGGGTTGGGGCACAGTGAGGGTAGGGGGGCTCCCCACCAGAGGGAACCAGCTGAGCTGGAGTTTAGGGAAGCCCAGGGAGGGTGATCTGGTCTTCTGTGTGGGCTCGGAGGCTGAGAGGGCAGGGATGCTGGGCTGCGCAGGCGGGACTGGGATCTCAGGGCCTGGCCAGGAGCCCAGCCGATTTGCATCTCGAGGTGGAGGAGAGAGAAGTGTCAGCTCATTCTTGACTGTAAACACATCTCAGTTCCCACGCTTCTGATCATGTTCTTGTGGCAGCCCCCACCCCCATCCCCTTCTCCTGTCCAATCCCCTGGCAGCTCCCCCACCCCATAAGAGAGACTTTTAAAAAGAAGATACAGAGCCCCTGGGCTTCCCATCTGGACTTGGGAAAGAGTAGAATCATGGGGAGTCCTCTGCCAGCAGCCTGGATTTGGATCCCAGCTCTGACACTCCTGGCTGTGCGGTCCTGGTCAGGTTTCTTACCCTCTCTGTGCCTGCTTCCTCATCTCTGAAGTGGGCCATAACACCTACTACAAGGGGTTAATGTAAACTTTAAATGTGATGATCCACGTAAATCTCTCAACACCCTGCCTGTCGCAGCTCAGTGAACGATACGTGGGGTCACCTTATGATTCTCGGGAGGGAAGGTGTTTGAGTCCCTCAAACCAGAGGCTTGGAGGGTGAAGGTTGAGTAGGGGAACAGGAGGGGGCCTCTGCATGAGAAGAAGCAAGCCTGCAGCAGGGGTGCTCCAGGGTCCCCCTCAGTGAGTGCACTGTGGGCCCCCAGGGCAGAGCAGGGGTCCAGGAGTGGTCTCATTTCACCCCCTTGAGGGGTATATGCAATCTCTTGGGTATATGCAATGGGCCCATTGCTGCTGTGGCTGGAAGGGGTTGGGGGAGCATGGGCCAGGCTCAGGTGCCCTGCCCCTCAGGGACAAAGGCTTAGATGGGAACTAGCCTGGAGGCCAGGCTGGGGCTCTGGGCTCCTGGTCTGGCCTGTGTTCCCTTCTCAGAGGCAAAGGATGGTCAAGCCAAAACCTTCCTCTTCCTGCCAGGACCCCCATCTCATCTGTCCCCTCCCGGGGCCACCCACTGATCTCCCCTGACCCCACCCTGGCTTCCAGCCCCTGGGCTGACCAGCTGATGCCTCCTCCGCACTCTGGCCCTACCCTGAGGACCTTTGGGAAAACAGAACCTACCCACCCTTCCAGCCAGCTAACCTCCCAGCCAGCCAGAAGTGGGTGGGGATGAGAGTCAGCTCCTCCTCATGCTCCTCAGTCCTTCAGTCCATCTCAAAGTCCCCCAGGTGAACCGTGTCCTCTAGAAGTTGGCTGGGAGGAGGTGACAGGGACAGGACTTGGGTGGGTAGGGGCTGACAGGAATGGGAGGAAGGACCTTTTCTCGGCCCAACAACAGCTCAACCTATATGGCACTTCCTCCCTGGGCCTTAACTCGACTCCTTCCTGCAACAAGTTTTGTCCATGCCACCACGCCATAGGCTCTGTGAACAGATCCAGGGCAGAAGGATGGCTGGGGAGTCCTTGTGTGTCTCAGGAGATGAGGCTCACCCAGGGACAAGGGTGATGAGCCTGGCTTCAGACAGACTGAGCTGCAGTTGGAGCACAGGGGCCCCACGCCAGGGCCAGAGCTGAGGGTCAGGGAAGAGGGGAGTGTGGAGACCGAGAGATGAGGCAGAGGCATATGGAGGGCTCGGGGTCCTGACCAGGGCCCTGGCTGCCAACCACACTGAGGGAGAGGTGGAGAGAAGGTTAGCTGGGGCTAGGCAGAGCGATCCCTGGAGTGGGCATTGGGCCTGGGAAGATGGCTGGAGCAGGGCAGGGTGGGAGGGGATGGTTTGGGGACATTGGGAGAAGGGATGACTCTATTTGGGAGTGGGGATGTGTCTGGGTGATGTGGGGGTGGAGCTCTGGGACAGACTCTGGGGAGTGTCTCTAGGGCACTCCTGACTGTGGCCTCTCCCCTTCAGAGGGGGCCACAGTGTCAGCTCTGGAGACAAGCTGCCAGAAAGAGGCTTCTGGTCATGGCCCTCCCGTATGCTACCCACTGCGTTCAGGATGGTGGGAGGATGGAGCCACCCCCGTCACGCTCCCTGCTGTCCCCCTTCCTAGCCAGGCTCTGTTTCCTGTTTTCAG
Seq C2 exon
GCTTCATATCCTGAACGCTGGGATCCCCCAGGACATTCCCTGGCCCCCAGGCCCCAGGTCCCAGGCCCCAGGGCTGAGCTGTGGGCAGGCCCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800:ENST00000338302:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains