RnoINT0109558 @ rn6
Intron Retention
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187127059-187128096:-
Coord C1 exon
chr2:187127998-187128096
Coord A exon
chr2:187127130-187127997
Coord C2 exon
chr2:187127059-187127129
Length
868 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GCTGAGTCCCCCCTTTTTAGGAT
3' ss Score
8.17
Exon sequences
Seq C1 exon
GTCTCCACTGACCCCATCTTGGCTTCTAGCCCTGGACAGAGCAACAGAAGACTCCTCCACAATGCAGCCACACCCTGAAGGTGGTTGGAAGGAGGGAAG
Seq A exon
GTAACCTTTCTCCAGCCAGCTATCCTCTTAGCAGAGTTGCAGTTCGCAATTTCCCATAATACTGCACCACCCCTGTTCTGTGCGGGGGACATCCTGAGCCCCCCGCTGAGCTGTTTTCTCTAGCGGCCATAGGGGGAGATGGGCAACACTTGTGATGCTTCTGGCCGGGGTGGTAAGGGCAGTTGAAACAGTGAAGGACTTCACACAGCCACAGCTCAAGCCACCTCTGCCCTAATTTGGTCTTCCCTTCCGGCGATGGGCTCCACCCACCACAGCGTGCTATGGTTTAGGAGCAGACAGGGCAGGGGCCGCTCATTGCCCACCATGGGTGACTCCGTAGATGAGCTGTATCCCAACTGGAGCCCAGGAATTTGGAAGAACGGACTGCAGGAAAGACCCAAGAGTAGGGCAGAAGAAGTGTGGAGAGCCCTGGGTGCCTTCCATGGCCCTGACTGTGGAACACCCTTGGGAGAACTAAGACCAGTTAGAGCCAACCCTGTTGGTGGCCAGTGAGTAGCATAAGGTTGGAGGAGACAGTTTGGGAACCTTGAGAAAGGAACTGACTTTGTAGGGGTAGGGACAGTGTCTGGTTATACACTCGATGGGTCAGGTTGTGGGTACCTCTGACTATGGTGTGGCTCCCTGGACCCCCAACCTCCCAAGGCCACAGTGCCTGCTCAGTAGCCAAGCCAGACAGATGAGACCCCTTCACACTGGGGCAGAGTGGTGATAGCAGGGGGAGCTCCCCACAACCATTCCCTACGTAGGCCTGGCTGGCCTCAGCCTCAGATATCCGCCTGCCTCTGCTGAATGCTGGGTCTACAGGCTTGTGCTGCCACCTTGACCCAGCTGAGTCCCCCCTTTTTAG
Seq C2 exon
GATCTAGGTCCTGAGCACTGGAATTCCCCAGAACAGCATCTGGCTTCCCAGACCCATGCTGGCCACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243:ENSRNOT00000019502:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]