HsaINT1026788 @ hg38
Intron Retention
Gene
ENSG00000109118 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr17:28912482-28914037:-
Coord C1 exon
chr17:28913879-28914037
Coord A exon
chr17:28913278-28913878
Coord C2 exon
chr17:28912482-28913277
Length
601 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCTCTCCTTCCATTGCAGTGG
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCCTGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCTCTCATTGCACCCGCGGCCATTCGGGACGGGGAGCTGATCTGCAATGGGATCCCTGAGGAATCACAGATGCACCTTTTGAACTCTGAGCACTTAGCCACCCAAGCAGAGCAGCAAGAG
Seq A exon
GTGAGTGAAGGTGGGGCGGGGATTCCAAATCCAACCTTCCTTCTGTGTCACCACAGCTGTTATCAGAAGTAGCCTCAGTGTCATTCTCATTCCAGTCCCCACCCACCCTCATCCTAACCCCTCAAGAGTTGAGTATTCCAGGGGGAACTTCTGGCTCAAATCCCAAAGGCAAGTAAGAGATCTACAAAGGCAACTGGTCTGCTTCTCTCCATCGTTACCCCAGTGCACTGTGAGATGGGCAAATCTATACTGTAGAAAGAGATGAGTAGACCCATAGAGAGGTTAGGTGATAGTGCTGGACATACCACAGGTGCTCGGGGTAATTGCTGAATATTGGTCACAAGTAAGCCTTAAAGGCAGAGTCAAAATGCAGATCCCAAGCTCTGTTGGCCAGAGGGAGTGTTGGCCTGCTGAGGGTACCTATAAGTCTTGCTTGGGAATGGAAATGGAATTCTATCAGGAGTCAAGCACACCCTTTGTGAGCATTCATGATGGGACCTCGGAAACTGCTTGTCAGCTCTGCTGCAGCCCTGGCCACTGTGGCAGGAAGGACCGGCGCCTCTCAGGCTTCTCACCCCCCTCTCCTCTCCTTCCATTGCAG
Seq C2 exon
TGGCTCTGTAGTGTTGTTGCGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCGCATTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAGTCACCACCTCCCTGCAAACAGCTGACAAGACACCTACACCTTCCCACTACCCCTTGTCCTGCCCCTCAGGGATTAGCACCCAGAATTCCCTGAGCTGCTCTCCACCCCACCAGTCCCCAGCCCTAGAGGACATCGGCTGCAGTTCTTGTGCGGAAAAATCCAAGAAAACCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTGAAAGCTAATGGCCCACACCTCTACAGCAGCCCTACTGATTCCACGGACCCCCGGCGACTTCCAGGCGCTAACACCCCACTACCAGGCCTCTCACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCAGCGGCTGGGGGCCTTCAGAACCACACCGTCGGCATCATTGTGAAGACAGAGAATGCCACTGGCCCCAGCTCTTGCCCCCAGAGGAGTTTGGTTCCTGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCAAAGAAAGACTGTCCAATCACAGATAGGACCTCCGTTGACAGATTCAAGGCCACTGGGCTCACCCCCAAACGCCACCCGGGTGCTCACTCCCCCGCAAGCAGCAGGAGATGGTATCTTGGCCACAACAGCCAACCAACGATTCAGCTCACCAGCGCCATCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109118:ENST00000332830:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGTTTCCACCCCCTCT
R:
TCTGGGTGCTAATCCCTGAGG
Band lengths:
353-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains