RnoINT0110338 @ rn6
Intron Retention
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64821842-64823308:-
Coord C1 exon
chr10:64823150-64823308
Coord A exon
chr10:64822638-64823149
Coord C2 exon
chr10:64821842-64822637
Length
512 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCTCTCCTTCCATTGCAGTGG
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCCTGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCTCTCATTGCACCTGCGGCCATTCGGGATGGGGAGCTGATCTGCAGTGGGGTCCCTGAGGAATCGCAAACGCACCTTTTGAACTCTGAGCACTTAGCCACCCAGACAGAGCAGCAAGAG
Seq A exon
GTGAGTGAAAGGATTGGGATCCCAAGTCACCAGATCCTCGGTGTCTGTCATTCCTACTTCTGCCCTACCTCCTATCCTCTAAACTGTGAGTGGTCCATGGGGAATCCCAAGCTCATATGCCAAAGACAAGAAGGTAATTTCAGTCAGACAGGCTGCTCTCCTCCTCAGTCCCCCGCTGCTGCAAGCTGGGCAGTTCTGTCTGTAGCCAGAGATTTACAGAGAGCTGTGTCTGTCTCACAGACAGGTGAGGTGATAGTGCTGGGCACAGAGCGGGTACTGGGTTATGTGCTAAGCGTTGATCACGGGAAATCTCAGCCTCCACTGGCTGAGTCTGTACTGCCAAGTGCACTGATGAGTCTTGCTTAGGAATGACAGTGGGATCCCTTTCTGTTGACTCGTGTTGGAACCTTGGAAACAGTGCTTGTCAACTCTGCCGTGTCATCTAGCCACTGCAGCAGGATGGACCAGCGTCTCCCCGGCCTCTCACTGCCTCTCCTCTCCTTCCATTGCAG
Seq C2 exon
TGGCTCTGTAGTGTTGTTGCCCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCGCATTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACAGCTGACAAGGCACCTCTACCTTCCCACTACCCTTTGTCCTGCCCCTCAGCAATGAGCACCCAGAATTCCCTGGGCTGCTCTCCACCCCACCAACCCCCAACCCTAGAGGATATCAGCTGCAGTTCTTGTGTGGAAAAGTCCAAGAAAGCCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCTCGGATCCCCGGCGACTCCCTGGCGCCAACACCCCTTTACCGGGCCTCACTCACCGGCAAGGCTGGCCCCGGCCCCTCACACCACCATCGGCTGGGGGTCTTCAGAACCACGCCGTCGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCTGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAATCACAGATAGGACCTTCGTTGACAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAGCTGCAGGAGACAGTATCTTGGCCACAGGCGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566:ENSRNOT00000056234:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAACGCACCTTTTGAACT
R:
CCACACAAGAACTGCAGCTGA
Band lengths:
342-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]