HsaINT1026970 @ hg38
Intron Retention
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase like 1 [Source:HGNC Symbol;Acc:HGNC:28711]
Coordinates
chr9:127927153-127927457:-
Coord C1 exon
chr9:127927297-127927457
Coord A exon
chr9:127927209-127927296
Coord C2 exon
chr9:127927153-127927208
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCCCTGTCCCGGCCCCCAGACG
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCCAAGGAAGGGTCCAGGTGCCGCGGATCTTGAGAAGGAGGCGTGGCCTGGCGCTGGGATTGGCGCCGGATGCACCCCGGGTTGTGGAGTTTGGGGATCCTCATCCGGCGCCCTCTCCCCTTCCAGGAGTGCACAGTCTGCGGGTGGACCGGGGAAAGAAG
Seq A exon
GTGGGTGAAGCCGAGGCGAGGTGGCTGGGCGGAGCGGGCGGCTGGAGGGCGACAGCCGGCCTCCCTCACTCCCTGTCCCGGCCCCCAG
Seq C2 exon
ACGTACTTCATCGTCATGCAGAGCGTCTTCTACCCCGCCGGCCGCATCTCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103:ENST00000497234:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(4.1=100)
A:
NA
C2:
PF0150413=PIP5K=PU(6.8=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGAGAAGGAGGCGTGG
R:
GGGTAGAAGACGCTCTGCATG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains