HsaINT1027498 @ hg38
Intron Retention
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151424955-151428041:-
Coord C1 exon
chr1:151427823-151428041
Coord A exon
chr1:151425062-151427822
Coord C2 exon
chr1:151424955-151425061
Length
2761 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
ATTCTTCTCACTTCTTTCAGTGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGCGAAAATAGCAATGAAGTGGCCAAATTGGTGAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCAGTGGTGGTGTCCAACAACAGCTCTGCTCATGGCTCTCAAAGAACCAGCGGACCTGAGTCTTCAATGAAAG
Seq A exon
GTACAATAACCTGAAAGACTCTGAGCAGCCAGTCATTCAAAAACATTAATAAAGTGTTTGTTGTATCAGAGCTTTATACTCAGAAATAGAAAAATAAAATAAAATACAGCTGCTGTAGTTTGTTCTTACAGAAACTTTAGTAAGGAGAAAGCCACTTACAAAAAGTGTAACTGAATCAGCTCCAAGAAATTATGTGTGTAATTGTGCTTTGGAGATTAGTGAAATTGATTGATTAAAGATGGGTGAGATAATGAAAGATAACTTCATGGAAGAGATGGATTTCTGAGCAAGGTTTTAAAGTTAGGATTTGGTAGAGAGATCTTCAGGTTGAGAATGATGAGCATGAGGGTTTTCAGTGGTCTAGAGCAGGGGTCGGCAAATGTTTTCTGTAAAGGGCCTAGTAGTAAAGTTGTAGGCTTTGTGCACAATATATAGCCTCTGTTGCAGCTATTAACTGTGCTGTTGTGGTGGGGAAGCAGCCACAGATACATAAACGAATGAGCATGGCTGTGCTCCACTAAAAACTATTTATGGACTCTGAAATTTAAGTTTCATAAAATTTTCATGTGTCGAAAAGTTTTATTCTTTTATTTCAACCATTTAAAAATAAAAACCGCAAGGTATAGTGGCTCACACCTCATCCCAGCATTATGGGAGGCCAAGACGGGAGGATCACTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAGATCCCATCTCTACAAAAAAAAAAAAAAAAAAGATTAGCCAGGCGTGGTGGTGTATGTCTGCAGTCCTCGCTACTCAGAAGTCTGAGGTGAGAGGATGGCTTGGGCTTGAACCCAGAAGGTTGAGCCTGCAGTGAGCCATGAGCATGCCACTGCAACAGAACGACACCCTGTCTCAAAAAAAGTAAAAACCTTTAAAACATGGTGTTGGGAAAACTAGATATCCATGTCCAAAAGAAGTTGGATCTTACCTTACAATAAATACAAAAATTAACTCAAAATGGATCAAAGACCTAAATGAACTAAAACTATAAGACTCTTAGAAAAATTATAGGACAAAAAGCTTCATGATACTGGATTTGACAGTGATTACTATTTCTTGGATATGACACCAAAAGCATACGCAAGAAAAGAAAAAATGAGTAAATTAAATTATATCAAAATTTAAAACTTTTGTGCAGGACGTTGTCAACACAGTGAAAAGGGAAGCCACAGAATGGGAGAAAATATTTGCAAATTATGTATCTAATAAGGGGTTAATATCCAGAATATATAAAGAATTTGTGCAGTTCAACAACAAAAAAACTCCCAAACAACCTTTTTAAAAAATAGACAAAGGACTCGCTGGTCGTGGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCAGGTGGATCACGAGGTCAGGAGTCCAAGACCAGCCTGACCAATAATGGTGAAACCCCGTCTATACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGTGCCTGTATTCCCAGCTGCTCGGGAGGCTGAGACACAAGAATTGCTTGAACCTGGAAGGCAGAGGTTGTGGTGAGTCGAGATTGTGCCACTGCACTCCAGTCTGGGCAACAGAGAAAGACCCCATCTCAAAAAAAAAAAAAAAAGTAGGAAAGTAGGCAAAGGACTGAATAGACCTTTCTCCAAAGAAAGTTATTGCCAATAAGCTCATGAAAAGGTGCTCAGTGTTATTAATCATTATGGAAATGCAAATCAAAACCACAATGAGGTACCGTCTCACTCCCATTAGGATGGCTACTATCAAAGAACCATAAAATAACAAATATTGTTGAGGATGTGGAGAAAGCAGAACCCTTACGCACTGTTGGTGGAAATGTAAAATTATGCAGCCACTTTGGAAACAGTATGGTGGTTCCTCAAAAAGTTAAAAATGATAGAATTGTTGTATGCTCCAGGAATTCCATTCTATACCCAAAAGAATTGAAAGCAGGGACTAGAACAGGTATTTGTACACCTATGTTCATTGCAACATTATTCACAATAGCTGAAAGGTGAAAGCAACACAGAGGTCCATCAACTGATAAAGGGATAAATAAAATGTGGTATTCACATACAATGGTATATTGTTCAGGCTTAAGAAAGGAAATTCTGCTACAACATGTGCTGCAACATGGTTGAACCTTGAGGACATTATGTTAAAGTGAAATAGGCTAGTCACAAAAGGACAAGTACCATATGATTCCACTTACTTGAGGTACCTAGAGTAGTCAAATTCATAGAGACAAAGTTGAATTGTGGTTGCCGGGGTGGAGGCGAGGGGAGAATGGTGAGGAGGTTTTTATTGGATATAGCTTCAGTTCTGCAAGATTAAAAAAAACAAAAACCTTAACAAAAAAATCACATACAAATTATTCTTAGCTTATGGGCCAAACAGAAACTGGTAGCTGGGCTGGATTTGATCTGTGTGCTGTGGTTTGCTGACCCCTGGCCTAGAGTTAGAACAGTAAAAGGAAGCCTCAAACATAGTGATCTTGAGCCCAGGGAGGTCAAGGCTGCAGTGAGCTGTGGTCGTGCCACTGCACTCCAGCCTGGGCAACAGACTGAGAGACCGTGTCTCAAAAAAAACAAAAACAAACAAAAACCATAGTGATCTCTCATGCTTGCTTACCCTTTTATATACTTCTCAGGGAGTGTTTGACTTTTTCCCAAAAGGTCAGTAATCTTTTTCCAGTGTCATTGTATTAATCTTATCAATTCTTCTCACTTCTTTCAG
Seq C2 exon
TGACCTCTTCCATCCCAGTATTTGACCTCCAGGATGGTGGACGGAAAATATGTCCACGATGTAATGCTCAATTTCGTGTTACTGAAGCTTTGAGAGGTCACATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442:ENST00000271715:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains