MmuINT1027101 @ mm10
Intron Retention
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94864458-94870186:+
Coord C1 exon
chr3:94864458-94864667
Coord A exon
chr3:94864668-94870079
Coord C2 exon
chr3:94870080-94870186
Length
5412 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATTCTTTTCCCTTCTTCCAGTGA
3' ss Score
9.63
Exon sequences
Seq C1 exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGGGTTACAGGTGAAAATAGCAACGAAGTGGCCAAATTGGTGAATACTCTTAACACTGTCCCTTCCCTGGGCCAGAGTCCTGGGCCCGTGGTGGTGTCCAACAACAGTTCTGCTCAAAGAACCAGTGGGCCCGAATCTTCAGTGAAAG
Seq A exon
GTAAGGTGAGAGGCTGGACACCAGTCATGCAGTCATGCAGAGAACATTGGTAAAGCAGTTGTTGCATTGAGACCATTGTGAAATGGAGAAATAAAATAGGATGCAGGTGCTTTGATTTGTTTTTACAGAAATGGTAATGTAGTAAAAGATTGAAAATGTAGCTGTAGCAGCTTTGGGGATCAATTAGAGACACAGATATGTTGATGAAAGATGTCAGTGGAGCAGTGGATTTTCTGAGGTGAATATTTTTTTAAAGATGTATTTTTATGCATGTGGGTGTGTTGTCTTCATGTCCATCTACACATCATAAGAAGACATTGGATCTCATAGGACTACAGTTATAGACAGTTGTGAGTTGCCACATGGGTGCTGGCAATTAAACTGAAGACCTGGAAGAGCAGCCAGTGCTCTTAATCACTGAACCATCTCTTTGGCCTCTCTGGAGGCAGTTTTTACAGTTGAGATGTGCTAGAGAGGTTTTCAGGAAAATAAGAATATGAATATGATAATATTTAAAGGTCCAGAGCAGGGACTGGTAACTTTCTGTGAACATTCTAGGCTTTGCGTGGAACATGTTCTCTGTTCTGAGTACTTAGGTACGCTGGCGCCATTGTATACAAGCAGCTGCCGATGATGACAGTGGCAAGAGCTGGACGCTGTTGTTTATGGGCTCTGAATTTAGAATTTTATATACTTTAAATGTGCCTCAAATTTTTCTTTTGGTTTCATTTCAACTATGTAAGAAATGTTGAATCTTTAAACACATTGAAAAACGTAGTCACAAAAAATTGAAATTCTTACTTTCTATGCAATATAAAAATTAATTCAAAGCCAGATGTAGTGGTGAATGCCTTTAATCCTAGTGCTTGGGATGCAGAGACAGAATATCTCTGCGTTTGAGGCCAACCTGGTCTATATAGTGAGTTGTAGGCCTGCCAGGGCAACATAAAGAAGACTTGTCTCAACAACAACAAAATAAAAACCTCTAGGTAAATCAAAACCCAAGCAAACACGGAAGCTGTAAAACTGAGAAGAGAGCTTGACATGAGGTTGGCATGTGTTAGTGCATGTCTGTAGTCTCAGCACTCAGGAGCCTGAGAATAAAAAAGGGCTTGTGAATGTGAGGCCAGTGTGGGTTACACAGGGCGATCGGTACCTCAAAAATCCAGAACAGAACAAACCAGCCAACTCAGGATGGGGGTTGACGAGAGGTAGCTTAGTCAATAAAGTGCTTGCCGCCGGGCAATGGTGGCGCACACCTTTAATTCCAGCAATTGGGAAGCAGAGGCAGCTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACTCTGTCTCGAAAAACAAAACAAACAAACAAAAACAAATAAAGTGCTTGCTGTCTAAGCACTAATACCTGACCTAGATCGCCAGTGCCAAGTAAAAGCCAGCATGGTGGCACATGCTTGTGACTTCAGCATCAAGGGGTCATGGAGTTCACTGGCCTCTCAGTCTAGCTAAAACAGTGCAGTGACTATCAGGTTAAAACTCTGTCTCAGAAATAATTTGGACCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAGAAAGAGAGAGAGAGGAGAGAGGGGAGGGGAGGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAGAGAGAGAGAATGAATGAATGAATGAATGAATGAATGAATGAATTTGGAGTATGATAGAGGAAGGGGCCTGAAGTTACTAATCTCTGGCCTCTCCAGGTAAGAATATCCACACATACATAATACACACATATGTATACACATACAAAAAGAAAAAAGTTGACACAGTTCCACGTGCCTGTAAATAGACCTAGCTACTTGTGAGACCAAAAAATGGATTGCTGTGTACCCATTATGACCAAGGGTATAGGCCGTGCTGAGAACCTATCTTAAAAATCAATAACCAGTATGATGGCTTATACCTGTAATTTAGCAGTCAGGAGGCCAATGCATGAAGATTACTGTACACACGTAAGGTCCTGCCGTAAAACAGCTAACCAGAACCAGAAGTCCCGGGAAGAAGCATGGGAAGAAGCTTCCCGTGATTAGATTTGACAAGTCTCTCGCATGCCAAAAGCACAGGCAGGAATCAAAATCGCTAATGCATCAGAGAACACTAGCAGCACAATGAAAACGTAACCTGTAGAATGGGTGGCAGATATAATATGCTAAGAAATTACTACCAATGAATAAATAATCTGTGTACTGTGCAAAAATAACAACCTACCACCATTACTGCCAATCTAAGGTGAGGCTAAGCAGGTGTGAAGGCTCAGCAGGTGAAGGTGCCTGCCACCAAACTTGATAGAGCACTTGATTTCTATCCCTGGAACCTGCATGATGGGGTGAGCCATTGGCCTCTAAATGCCTGCTGTGTGGCATGTGTGTAAACACACAAAATGTTGTGCCTGTTATAGTGGCCCGTGCTTTTAATTCCAGCACTTGTGAGGCAGAGGCAGGCAAATCTCTGAATTTGAGGCTAGCCTGGTCTATAACCCTTATCTCAAAAAGCAAAAAACAAAACTTTTTTTTAAATGAGGCAAAGAGGGCTTATGGAGAAGTAGCAGAGAGAAAATCCCTCCCCAGTGTGTGTGATCTCTGGGTTCCACCCCCAGCAGGTGGCAGGTCGGGGAGACATCTCTTAAGATAGTCATGAAATATCTGATAAGCATCTGGTGGCCAGGAGCATCAGTCTGCTTAGGGAAACACAAAAACCCTGGTGAAATAACATCAGTACCCATTAGAATAGCTATCAGAAAACAAGCAAACAACTCAACTAAACTAGCCGAATAACTCAGAAACACAAATACTATATGTTTTTTCGTGGATCCTAATTTCTATTTTGTATAAGTGTGTATTTTATTTTTATATGAGTAAGTTTAGACAGACGCCAGGAAACCACAAAATGTGCAAATGGTTGGGGAAGAGAGGTGAGTAGAGATCAGGGAGGAGCCAAGCGTGGTGGCGCATGCTTTTAATCCCAGCGCTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTAACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAACCCCCCCCCCCCAAAAAAAAGAGCGATCAGGGAGGAGATATTAATAGACCCATGTGATAGGAAGTGGGGGGGAGTCCTGGGATTGTAAGCAGGAGCAGGGGTAGGTAAAGGAAAGGAGCAGACATGGGTAGAGGATCAACCAAGACTTTGTGTGCATGAAAATGCCACAAGGAACTTCCTTTGTATGTTGGCTGAAAAAGAAGATGGTGTGTAACTAGGAAAATGATCTCTTCAGAGAAGATCCAAGATTATGAGAAAGTAGTGCCTTGATCTAGCCAAATGATTATACTCTTTCTTCATGAAACATGTGGAAACATGTTATATTAATTCAGAATATAATAAAAGGAAGTGTCAGAATATAGCAAGAGGAAGCTATAATTGTTTTTTGTTGTTGTTTTGCTTTTTTCAGTTTTTCTTATTTGTTGTGTATGGGTGTTTTGCCTTCATATGTATACATGCCTGGTGCCCATACAAGCCAGAAAAGGGCATCAGGCCTTCTTAAACTAGAGTTAAAGATGTTTGTGTAGCACTGTGTGTTCTTAATAACTGAGCCATCTGTCCAGTTGTTTTCAAAAGTAACAGAATGGGCTGGTAGGGTAAGATGGCTCAGCATGCAAAGCTGCATACTGCCATACCTGACAGACAGCCTGAGTTTGATCTCTGGGACCCACACTGAAGGACAGAACTGACCACACACACACACAATAGATTTAAGTGACATTCAGGTGAGGATATAAAGGAAGTGGACCTCTGTGTACTATTGGCAAGGACATAACATTGTTCAGATACTGTGAGAGATAGTATGACGCATCTCCACAACATTTTTAAGTTTCCATATGCTTTAGAAGCTTGGCTTTTGAGCATAGATTGAAAAGAATTGACAGCAGAGTCTAGAACAGAAACCTGTAACCTGTGCTCACAGCAATGTCAGTCCCAATTGGCAAAAGGTGAGAACAGCCTAAGTCACATTCCAGTCCTGAGTGGATGAACGACCGACCGACATGTGCTCTGTTCACACAATAGTCAATAGTGCTTAGGCTTAAAAGGGCAGTCTTTTTTTTTTCTTTCCAGAAATTTTTTTTGTTTATTTTTGTGACTATATTTTAATTATATTTCTTCTTTCCCTCTTCTCCCTCCAAACCTTCCCACATATCCCTCCCCCTACTCTTCTACAAACTTATGGCCTCCTTTCATCAGTTGTTATTATGTACATATATGTATTTGTATATACATGCATATTCCTAAATATAACCTGTGTAGTCCATATAATGTTACTTGTAAGTATAGGAAGTATTTTTGACACAATACAACATGGAGAACTTTAAGGGCATTGTTAGGCTCTGTGAGATGGTATCAAAGTCCAGACCAACCAGGGTTGCATAAGGAAGATCCTGGTCAGAAAGGCCCGTTGTAGTCCTAGTCCCTGGCGCGGGTAGACAGGAGGATCAGGAATTCACAGCCAGCCACAACTGTATCTTGTCTTTAAGGCTGGTGTGGGCTACAAGAGGCAGGGCACTGTCTTAGATAAAACTGTCCCCCAAAATAGTTTCCATTTTATAAGTTGAGACAAGTTCTGGAAATTATACAACATGAATGTACTTCCTCCCCTGAAGCCGACTTGAAGCTAGTTACACTCTGAGTGCTGCTTTCTGTGTATCATAGTGTCACAATTAGATACATAGCTTTGCTTTTAAATGTGCTGTCCCTTTATAAGCCAAATGGTCTGTAACTAGATAGTATAGACGAAGCTGGCCTGGGACTTCAGATCCTCTTTTCCCCTCCCAAGCATTGAATTTACAGGTATACATCGCTGTGCTCAGTCAGTTCCATTACAGTTTTTAAAAAGAAAATGTCTGCCAAGCACATGGTACATGCCTGTTATCCCAGCACTTGAGAGTGGAGACAGGTTAATCATGAGATTAGTGTTAGCCTCGATTACACAAAGATGCTCTCTGAAAACAAACCAGAAAACCATAAATGAGAGAGAAAGAAAAACTTTACCTAATTGGAGTTGATGGTTTAAAAAAGGGGGTGTGGCATTTGTAGCTCATGAGTCAAAATAGAAACTGGCTGCTAGCTGAGATGGTCTCTGGGCATCAGTTTGCCAGCCCTGGCCTAGAGTTAGAACAGTAAAGGGACTGTGTCTCACACACAGTGCCTCTCATGCTTGCTCTTTACTCTTGGCTCTCAGGGACTGTGCAGTCTCATCCCCGTATGCTTTACTAATCTTAACAATTCTTTTCCCTTCTTCCAG
Seq C2 exon
TGACCTCTTCCATCCCAGTGTTTGACCTCCAGGACGGTGGACGGAAAATATGTCCACGGTGTAATGCCCAGTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902:ENSMUST00000107270:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=PU(91.3=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types