HsaINT1027815 @ hg38
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95287110-95288718:+
Coord C1 exon
chr7:95287110-95287133
Coord A exon
chr7:95287134-95288535
Coord C2 exon
chr7:95288536-95288718
Length
1402 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACGTAACATTCCTATCTTAGATC
3' ss Score
6.97
Exon sequences
Seq C1 exon
AGCCTGGATATGATAGATGACGAG
Seq A exon
GTGAGCTATCAGTGGGCTGTGTGTGGTGGCTTGTGTGCTATTGTTTGAATGTGTTTTTTCGCTCTTTGGAGATGACTGAAAAATCAGACAATACAAGAATATCTTCCTCTGTAGTGAAGGGTTTCCTTGTGTTAAATAGCTTTACTCTCTGCCTTTGTCATATCTTAGTTTAAAAGATGTTCCTAACTTAAGAGGATCTCCGCATTGCACCTCCAGAGTTCCTCGATTTCTCTTCCATCACCATTACATTGACATGGTCCATTCTTCTTCCTCTCCTTTGCCTTCATCTCAGCTTACCCTATCCCTTCTTCTGTGTTCCCTGTGTGGGTCACCAAGGTGACTCCTGTCTTTCCTTCAAGACCTATCATCACCTTCATCTCCTCTCAGCTTAGTGGGTCTAGGAACCAACCTGTCCCTTTGCACTATTAAAAGGAATATTCTGCAGTGGACAGAGCCAGAAATTTAGAATAAACTCCTAACTATTGAGCTCTACCACTTACTAACTGTGTGATCTTGGGCAGATCACATAGACTTTCTCAGCCTCAGTTTCCTTGTTTCTTTTTTTGTTTTTTAAGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGTTCACTGCAACCTCCACCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCTCGAATAACTGGGATTACAGGCATGCGCCACCACCACACTGGCTAATTTTTGTATTTTTAGTAGAGAGGGGATTTCAACATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCACCCACTTCAGCCTCCCGAAGTGCTGGGATTACAGATGTGAGCCACCATGCCCAGCCATTTCCTCATTTCTTGAAAGTAATGATGGATATTATATGCCCTACCTTCCTCACAGTTTGCTTGCTGCTCAAGTGAAATAATGGTTGTGAAACTTCCCCTAAGAAGGCTTGAGAGCTTAATGCTCTCCTCTTGCAAGTGAAAGATACCTCAGTATTTGTTAATATATTTTTACAAAATTCCAATGTCTTATTAGAGGATAAGTGATGCATTGCATATAGAAATTTATGAAATATTTATTTTCTACATCTTATAATCTGTCCAGACTGTTTTGATGTAAAAGCTTGCAACATTAATATATTTTCTTCAATATTAAACTTCCTACATTAATAATGGTGCTTTTTTATTATGGGGAATTTCTAAACTTCTAAAAACATAAAAACATATAGGTAATAAGTATTTTTTCTAACACCACTAGAACCATTAGCTTATCATATTTTGGTTTAAACATAAATGTGGCTCTCATAGGTTAAGAAATTCCTTTTGATAGCATAATATGAGCCATAGTATCTTGGTCCTTTAACAACACTACGTAACATTCCTATCTTAG
Seq C2 exon
ATCCTTGATGATGGACAGTCTCCCAAACACAGTCAGTGTCAGAATCGGGCCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTAATGAGCCTAAATCTGGAGCAGTATGTATCTGAATTCAGTGCCCAAAACATCACTGGAGAACAGCTCCTGCAGTTGGATGGAAATAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528:ENST00000433881:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGATATGATAGATGACGA
R:
TTAAGTTTATTTCCATCCAACTGCA
Band lengths:
206-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains