HsaINT1027921 @ hg38
Intron Retention
Gene
ENSG00000112238 | PRDM13
Description
PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
Coordinates
chr6:99609187-99615578:+
Coord C1 exon
chr6:99609187-99609307
Coord A exon
chr6:99609308-99613032
Coord C2 exon
chr6:99613033-99615578
Length
3725 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
TTCCATTCTTTCTTGCCCAGGGG
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATCTTCTACCGAGCATTGCGAGACGTCCAGCCAGGGGAGGAGCTGACAGTGTGGTATTCTAACTCCTTGGCTCAGTGGTTCGACATCCCCACCACAGCGACTCCGACTCACGACGAGAAAG
Seq A exon
GTACCCATTCCAAAAGCGTGGATGGGCAAAAGTCCAGCCCTCCTCCTCCTGTCTTGAAGCGAGTCCCTAGACATAGCTCGATCTATGTAAAATGGAATTCACATTCCCTGTATTTCAAGGCAAAGAGGAGAGAGGTCGCCACTACCTCCTTAAAATCAACCATAAACGATAACAGTGATAGTAGCAATCTGGCTCACAATGGCAGGGGAAAAAGTAGGCTCTATGAACTTAATGGGGCCATCCTTTTTCTGTTGCATATTCAAACAGACCATTATTTACTCAATTAAAATAAAAAAAATTAGGCGCGGTAGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGAGGATCACTTGAGGCTAGGAGTTCGAGACCAGCCTGGGCAACATAGTGAGACCTCTGTCTCTACAACAAAAAAATAATTAGCCAGGTGCGGCGGTACATGCCTGTAGTCTTAGCTACTCAGGATGCTGAGGCAAGAGGATCACTTGAGCCCAGGAGGTCAAGGTTCCAGTGAGCCGTAATGTTACCACTGCATGCCAGCCTGGGTGACAAGTGAGACCCTGTCTCAAAATAAATAAATAAAAATAAAAAATAAAAAAGGAGCCTTAAGTTGTTGTTACAGTAATTACATCATGAGTTCCACAGAGTATAACTCAAACCTGGAATGCTTTTACAAAGTCCATGGACATTTCTTCTCCACTGGCTTTCCAGGAGAGCAGTGCATTTCTACAGCATTTTAGAAGTATTACGGTACTTACAGCTGGTCAGTTGGCAGGTACTGAGACCCTTCCATTTAAGTGGCATTTATTCATTTCCCCTTGCCTACTTAAGTTGAATCTGGGATGTATCCCAGTTTCTTCTCAGATTTATTTGATCCCTTCAAAGCCAAGAGCGGATTTATGCAAATTAAGGTGCAGTAACTAAACAGAAAAACATTTTTAAACCTACCCTTGAACACTGAAGAACACTTCCTGTGGAAAGAAGTCTAGGAGGTGCTAGAATAGTTGAGGTTTTGGAGACTTCCTTTTCACACACAAAGCTTCCATGGCTTTTTTTCTTTGACAATTGTCTGTAATTTCTCCTAAAGACACATTTAACATCAAAATAATGAATGCTGTGAAATATTCTAACATGCTGTCTTCCTGAATTGCCTGCTCAATCTCATCCCTTTAGAAATAGGTTTAGAGAAATCAATACAAGTATGTGAATTAGGAAACACTTCATGAATAACACAGAATGAAGTTTATTCAAAACAATGAATCACTTTAAAGTATCATCGTCCTCTGTAAGTTAATTCTGTTTATTTTGTAGGTATAGTATTCAAATTATCCTAAAATAGTTTGTTCCTTGCATCACATTATATTACATTCTCTTGTCAACTTCTTCCAGTAAAAAGAGAAGTATAATAAAAGCCACATAGTGGAGAACTCTCAAATCTGCCACTATAGAATTTGGCGGGCCACTAACCTTTAGAAGCCAGCCATTTCTACAGAGAACACCCTTTCTTAGGTAGTCCCAAATAGTACAAAAGCAACTGGAATAGCGGTCCTTGTGTTTTCCTTTCAGCCAATTGAGCTTATAAACATCATATGGTAACAGATGTCAAAATAAACATTTTTTTTTTCTGGAGGTGAGAAGGCATGGGTGATTTTGAACCCTGACTTCCCCAGCTTGGAGAAGTTTGAACTCTTGACCACCTTAGAGTTACATGAAGAGGAGGCAGTCACTTGTTAAATGTATTTGATACTCTTGGCATGATTTGGATCTCAGAGTCTGGAGAATATGTCAGTTAGGATAACTGAAAAAAAGTATATATTAAACGTATGCTGCTTAAAGCTTGGAAAGAGGAAGAAATAAATAGGGATGGCTGCTATCCTCCTAATACTAGCTAACTTCAGTGGGTTTCAATTTCATAGTAAGATGGAGGAAAATACTGCCCCCTCATTTTAAGAAAAAAGCTTATGTGGCTTTGCATTGAGCTGAGTCATTCTGCGGCAGACTCTGAAAACTCCCTCTTTCAAAAGGGGTGATGAGAGAGAGAAAGGCTCTGAAGTTAGAAGGAAGTTATTTAAGACAACATACCCACCAAGAGAACCCAGGAGGTCTATTCTCTCTTTTTTTCACGATTCATTTTACATGAATGTTCAGTACAAGGTAACAGAATATTGAAATGGTTTTATCTAAGACTTCTATAAACGATTAGGGTAGGGTGTCATAGGCAAATACTCTTCTCCCATTTTTCTTTCTGCTCTCCTTGGACTCAGTTGGAATGCAGTGCTTATCACTTGAGTTTTCACAGGTCTTATGGGGTAGGGGTGGGAGCTACTTGTGTTATGCAAACCCAGAAGTTAATATACATAAAGGGAAGAAGATCTGGAATTCTTCCCTATTGTTATTTCTGTAGTAATATTTCAGAAGTTTGAGCTGCTCATATATGCAGAGGGAGAATTTAACTTTCCTGTTAAATTTTATGAGACTGATGTATATTTTGGATATTTCCTTGCGGTTCAACTAACTTCTTTCTCAGACATCTTTCCCTTCAGTATTATCAATCAACCACATTTTAAAAGAAACCCAACTGCAAGATCATTTCTCTCTACAGCAGTAATATGACCCTTTTAAGTGGAAATTAACTTCTAGTATGTGATCAGAATGTCTCATATATGTGTCTCTTGATTGTGTTCACAAACTCGGGCAAAATGAATAAACTAATGCTAATAATACTAAACACATAAAAAGATTTCACACCAAACACGTATATAGTGCCCGGTAGAGAATTCTGCACTTATTAAAAGCTGAGTATCTATATTTATTTATCGATCTATATCATTTATATATATTCATATAATAAAAAACTAATATATTTTCTCCAAAGACTTTACTAAGCTTGGATTTGTGCAGCTATCTAGGAGTTAATTAATTACCAAGTGGCAGACAAGACAAGACAATGCAACATCATCCTTCTTAGATTATCATCACCCTTTTTAGAGTATCAGGGCATAAGAATTTTTTCTTTTCTCCCAGCAAATTAAATGGTGTTAAAGAGGAAATAAAGATACAAATAATTTTGAAGAATGGCAAATCATAGTCCCTATGTGGTCCTTCAGTTGGTCACGCTCCAGGAAAACCTCAGGCAAAGTGTTTAAGGCTGGAAGGGGGTGGAATGGGTGGGTAGGGGACACAAAAGACATTGTCCTGTGAAAAGGAATGATTACATATGGCCTATACATACAGGATATTGTCTCGCCTGGTAATGAGGCGCTCACGACCATTAGATTGGTCTTTGTTCAGCTTATCCAAACTCCTTGACATACGCCACCTATTCTGCAAACGCCAACAGATGGGCCCAGGCACTGCACAGCCTCAACACTTGATTTAAAGCAACAGCTGCTCTTTGCTCTTACACGGCCAGCCTGCCTGAGTGCTGCCCTTCCAACGAAGATTTTGCTCGGATGGCCTGGAGGAAGTCTTCGTTGGAAAGGCCCCGTCACCTTTTTTGGCCTCCGAGTAGTCCCAGAGGATGGAGACACTGATAAGGATTGGCCATTTGGGGCTTTTCGGGGTCCTCGATACAGTAGGGCTACCGAACTTATATTTCACCCTCTCCCCACACCGCTAGTCGAAACTTGGGCTTTGCCTTGGGTGCACTGGCGCTTTCTTTATGTCTCGCTTGTTCGCCTCTCACCGGGTCGCTTTTCCATTCTTTCTTGCCCAG
Seq C2 exon
GGGAGGAGCGCTACATCTGCTGGTACTGCTGGAGGACGTTTAGATACCCCAACAGCCTTAAGGCACACCTGCGTTTCCACTGCGTGTTCAGCGGCGGTGGAGGCGGCGCCTTCCTGCACCACGAACACGCGGCTCGCCAAGGCGCCGTCCCAGCGGCTGATGGCCTCGGTCTCTCCCCAAAACCCCCGGCGCCCGATTTCGCCGCGCCTTCCCAGGCAGGAACTTTGCGACCCCACCCCCTGGGCCCGCCACCAGTTCAGGCCTGCGGTGCGCGGGAGGGCATCAAGCGCGAGGCCTCTTCCGCGCCCTCGGCCACCTCGCCGACCCCAGGCAAGTGGGGGCAGCCCAAGAAGGGCAAGGAGCAGCTGGACCGTGCCCTGGACATGAGCGGAGCCGCCCGAGGACAAGGGCACTTCCTCGGCATCGTGGGCGGCTCCTCGGCGGGGGTCGGCAGCCTGGCTTTCTACCCCGGCGTGCGCTCAGCTTTCAAGCCCGCCGGCCTAGCGAGGGCGGCGGCGGCCGCTCACGGCGACCCCTACCGGGAGGAGAGCAGCAGCAAGCAAGGAGCCGGCCTCGCTTTGGGCAGGCTGCTGGGCGGGGGCCGGGCGTGCGGGCGCCCCGGGAGCGGGGAGAACTCGGCGGCGGGCGGCGCGGGTCACCACCATCACCACCACGCGCACCACCACCACCATCCCAAGTGCCTGCTCGCTGGGGACCCGCCGCCGCCGCCGCCGCCTGGCCTGCCCTGCTCTGGGGCCCTGCGCGGCTTCCCTCTGCTCTCCGTCCCCCCGGAAGAGGCGTCCGCCTTCAAGCACGTGGAGCGCGCCCCGCCCGCAGCCGCCGCGCTGCCAGGAGCGCGTTATGCGCAGCTGCCCCCTGCGCCGGGGTTGCCCCTCGAGCGCTGCGCGCTGCCGCCCCTCGACCCGGGCGGTCTCAAAGCCTATCCGGGTGGTGAGTGCAGCCACCTGCCCGCCGTCATGCCGGCCTTTACAGTCTACAACGGGGAGCTGCTCTACGGCTCACCGGCCACCACCGCTTATTACCCGCTCAAATTGCACTTCGGCGGGCTGCTGAAGTATCCGGAGTCCATCTCCTACTTCAGCGGGCCTGCAGCGGCCGCCCTAAGCCCCGCCGAGCTGGGGTCGCTGGCCAGCATCGACCGAGAGATCGCCATGCACAATCAGCAGCTGTCCGAGATGGCTGCCGGGAAGGGTCGCGGACGCCTGGACTCGGGGACGTTGCCACCGGCCGTCGCGGCGGCGGGAGGCACCGGGGGCGGCGGCAGCGGAGGCAGCGGCGCAGGTAAGCCCAAGACCGGCCACCTGTGCCTCTACTGTGGCAAGCTGTACTCGCGCAAGTATGGGCTCAAGATCCACATGCGGACGCACACGGGCTACAAGCCACTCAAGTGCAAAGTCTGTCTGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGGCTGCACGCCGAGGGCAATACGCCCTACCGCTGCGAGTTCTGCGGCAAGGTACTTGTGCGCCGCCGGGACCTGGAGCGACATGTCAAGTCCCGCCACCCTGGCCAGAGTCTGCTCGCCAAAGCGGGCGACGGCCCGGGTGCCGAGCCCGGCTATCCCCCGGAGCCTGGGGATCCCAAGAGCGACGACAGTGACGTGGACGTCTGCTTCACAGACGACCAGAGCGACCCCGAGGTTGGGGGCGGCGGGGAGCGCGACTTGTAACGAGTCTTCCCGGGAAGGGGCGGGGTGAGGACAGAGAGGAGTCGAGGGTTTATTCTCGCAGTAGAGGAACTCCTGGTGGTGGGAAGAGGGACCCAATGGACAAAACCGTTTTTGTTTTTGAGAGGGCGCCAGATTTGAAACAGTGAGAGGTCCCACATCTGGTGCTGAAACTCAGAGCAACAGTTCAGAGGTGGCGTAAATCTGGCCACCTGGAGAGCTCGAGTGCCACCAGTACCTCCGCACCCCGGGCCTCTGGACTTCTTGGATGAGCTCACCCTGAACCGCCCAGGCGGTCTGCTCTTGGTGTTCAGAATCACATCAATGCGAACGTCACAGCGCCTTCGAGGGCGCAGATTTTAACTGCCACGTATTTTTAAGTTGTACTTTTCTGTGGAGGAAATTGTGCCTTTTGAAACGACGTTTTGTGTGTGTATTTCACGTTAGCATTTCATTGCATAGGCAAAACACTAGTCACAATTGGGTAGATGTGACATCCATATACTTGTTTACATTTTATCTGTTCTCATGTCAAAGACTACTCCTTGCCCCATTGAATATATAGTGGTAGCAGGTGTACAAATTGGTCAAGTTGCAATTATTTATGAGAAAATAATGATAAATGTAAAATATCTAAAGCATGAATCTAAGAGCACGCAATATATAATTTTAAAGAAAATATTCTATTTGGTAGAATACAAATGTGGTGTGTGTTGTTTTATAATGACTGCTGTACAGTGGGTATAGTATTTTGGTTTTGGTTCCAGATTGTGCAATCTTTAAGAAAAATAAAGATACAAACGAGAGTTTTGTTCACTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112238:ENST00000369214:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.504
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(43.2=46.3)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains