DreINT0119260 @ danRer10
Intron Retention
Gene
ENSDARG00000078701 | prdm13
Description
PR domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-080616-1]
Coordinates
chr16:32797575-32801870:+
Coord C1 exon
chr16:32797575-32797695
Coord A exon
chr16:32797696-32799794
Coord C2 exon
chr16:32799795-32801870
Length
2099 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTTATGACATTTTGTTTCAGGTG
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATATTTTACCGTGTGGTGAGGGAAATCCAAGCTGGAGAGGAATTGAGTGTTTGGTATTCCAACTCGTTGGCGCAATGGTTTGACATTCCCACAACGGCAACTCCAACACATGACGAAAAAG
Seq A exon
GTGAGACCGCATAGTTTTTTTTTTAATCCACGATGACAATAGTAGAAAAATTTATGAGTTTTTTAATACACCTAACTATATCTAAGAAATATAAAAACATATTTATAAACCACATTAAAATAGTTTTCAAGCTAATGTAAACCGGTCGTTTTTATATCACTAAACAACACGACAATACTCATTTTAAAACGAATAGTAAATGAGTCAGGATGTCATGGGCTATGATTTTTAAGCATCCCCGCCACCAGCAGTGCAAATCCTATTTAAATCCCGTTTAATAGGCTTATCTGCGAATGTTGTCAGATTATCATCCCTGTTTACTTAGTAAATCGAAAGGTCTGTCGTCTGGGGCAGTAACTGTTATTGATTAGTTGAGAATTATAGAACTGAGTAAACATACTGTAGGCTATACTGTATTTGCTGTATTAACGTGATTGATTATACTCAGTGGCACTATATGCATTACCTCTTTTAATTCGTCTCATCCAAAGTCTCCTGGGTTGATGCACGGTGTTCAGCGAGGGGAAGAGGTTAACCAATGTCACCCTGTCATTAATATTCATGTATTCAAAAGGAGATGAATTCAAAAAGGTGCTCTACGGTAAATTAGCTGCCTGCTTAAGGTATTGTTGACTAGTGAATGCAAACTTTTATGTGGGATGTATATTGCCCTGATTCGCGACGCTGTACTGTGAGGGCTGCTCTCTGGCCAATACGCGGTGCGCTTCTTGACATACGCTTGCTATTCTACAGCGTCAACAGATGGACCAGCCTCATTGTCTTATGCGACTAGCGATTTCAAGCAACAGCTGCCGCCAATTCCACGGGAAAGCGAACAGAGAAAGTCCCCTATTCAATGTATTGGTTTGTAAGCGCCAGATTGGGTCGGCGCTTGCTCTTTTGATGGTGACAATAAACAACGGGGTTTTGCGGATTACAAAATCATTACATCTATATCATTGACCCCGGACTGCCCAACTGGTGTCATGCCAACGTGACCAAGCAGTGATGATAAAGACTAAAGGCTGCAGGCTTCAAAGGTTATCTGCTCATCTTCTCCATGCACATGAAGAATAGTTGGCACTCGTGGCTTTGGAAACTAAGATACATTGTTGTTTAAAACAAATCAATTAATCAAATCAAGTTACTTGATTTTTGTTTTTTGGTGTAAATTAAAAGGTTCTACTGTAAAACAGGTGCAATTTCGGCAGGGCGACCATAATAACCCATTTTTACATTTTTTTTTTAAATTTTATTTCAGTGACTAGTTTATGTAGTTTAGTATGTTTATTTTAATGATCAATTTACGATTATATGTTTTGCATTTTAGGGCATTTATTAAACTTAATTATATGCATTTTCCGTAAGTAACCACACAACCAATCTTATATTGCACGAGTGTTTTTGTGGGGATAAACAGAAAGACAGTAAGAGTCAAAATTATAGAATATTGTGTAAAGATCATCTCCCATTTCATTTTCCACGATAAATATACAAATAAATAGCTAAGAACCTAATTTCTCAACATTTTGAACTAATTAAACCCTCAGATGTAAGATTTTCAATTAGTAGGCCTATATATCGAATAAATATAACATCAGTTTAATAAGCTTATTATTGCATTAATCTCAATAAAAAAATAATCCTAATGACTTTAGTGGTTCTGGGTCATAAATGACATGTTTAAAAGAATCTGTCTAAAAGGGAAATTTCCACAAAACTTTTTTTTTTTGAACCACAAAATTAAGTTTGGCCTCATAAAAAAAAAAAACTTTTTGCAGGTGAAAAAAATCTCAGTAAATATGCTAATAAAAAGTTTATGATAAGTGAACAAAACTATTATTTTTAATTACAATTTTATATTTAACAATTTGATATACAATGTCTTTCAGTTAAAGAGTTGAGGGTGCAGTATCAAACGTTTCCACTAAATTAATATTGTCTCACGTGTCCACTGCTATCATTTATGGCCACAAACAACACAAATGTGTGCATTTTATCCAAGACATTTTTACTTTAAATTCATGTTCATGGTTTGATAGCAAAAGGAAGTGTTAATAATTATGACAACAACTAATGGTTATGACATTTTGTTTCAG
Seq C2 exon
GTGAGGAGCGATACATTTGCTGGTATTGTTGGAGAATATTCAAATACCCGAACACCTTGAAAGCTCATGTGCATTTCCACTGCGCCTTGAGCAACGGAAGAAGCTTAGTGAGCAACGAGCAAGTGAGGGGCACAGACAACTTCAACAGATCTCCAAAATCCGGGGACATCCCTAACACGTCGACTTCTCCACGAAACGGCCACAGCACCTTCATGTCAGACGCGGTAAAACGCGTCGCCTCTACCTCGCCGTTCGCTAACAAAGCGAAAAAACCGACCGCGGAGGAGCAGGACAGGGCCCTTGACATGAGCGTGACCTCCGCCAGGAACCCCGGACACATCTTGGGCCTCGGCGGGACACCGTCTGTGCTCAACAGCATGGGCTTCCATCCGGGCGTGCGCTCTGCTTTCAAGCCAATGGGACTTGCGAAGATATCCCCTGCTGAGGTTCCGAGAGATGAGCATAATGTCAAACCAAACAGCATTGGGTTTAGCAAACTGCTGGGGAACATCAAGTCAGTGCGCGGCCTGAATGAAACACTGCCTAGTGTTCACCCCTCAAAGTGCGCACACCCCATGGACAGCACACCTCCAGTGATCCCTTGCGCAAACGCCATTCGTGGTTTTCCTCTGCTGCCACATTTTGAAGAGACCTCAGCTTTTAAACACGTTGACAGCCGCGTGCACCCTGCCCTGTCGCCCTCGCGCTACTCCCAGCTGCCGGCCGGGTTTCACTTCGAGAGGTTTTCCTTGCCACAGTTTGATGGGGGGAAATCATATAATGGAGACTGCAATATACCCATCATGCCATTCACAGTGTACAACGGAGAACTCCTTTATAGTTCCCCATACTATCCCCTAAAATTTCACTTTGGTAACCTGCTAAAATACCCAGACTACTTTGGCGCACCTGCTCTAAATCCAGATCTAAACTCGATCACGAACATCGATAGGGAGATCGCCATGCACACACAACAGCTGTCCGAAATCGCCGTGGAGAAGAACCGCTCACGACTGGACTCTTTGCCCGCTTCAAACCCCAACTCGGGCAAGCCCAAAAAGGGACACTTGTGTTTGTACTGTGGCAAGCTGTACTCTCGAAAATACGGGTTGAAGATTCACATGAGGACTCATACAGGCTACAAACCACTCAAATGCAAAGTGTGCTTCAGGCCTTTTGGCGATCCGAGCAATCTGAACAAACACATCCGCCTGCACGCGGAGGGAAATACGCCCTACAGGTGCGAGTTTTGCGGAAAGGTCCTCGTGCGCAGGCGGGATTTGGAGAGGCACGTCAAATCTAGGCATCCTGGTCAAAGCATAAAAAAATCCGACGTCAAAATGGAAGGCATGTTTGAGGACGGGGAGCAAAAAAGCGACAACGACAGCGACGTCGACGTTTGCTTCACAGATGATCAGAGCGACCAGGAATCGAGCAAAAACAATGATTAATGGGCCACTTTACGGACACACTAAAACAGACTTTTGCTCTTAAGTAGCTAAATTATGCATGTACATAAATTAGTAATGAATTGTTTGTTTATTTTATATAATTATTGTGAAAGAAAATGTTCCCTTATTAAATAAATAAATCTGTGAAGGAGGCACTCATGAAGTTGATCTCAAATCATGCTTATTGGAATTGAGGACATCTCAGCACACCCAATGCGGAGCTGCACTTTATAAAGACGGGTTTATGTCATACAACAGATCATGCGTCTTTCTATAATAAATACTGTCTTACCGATTCTTTATAACACAGCGTTGGAATTACCCGTCAAATCCGCACTTTTTATTACCAAAAGCATTTTAACACATGATGTAAAAAGTGATTTTTATTTTATTACTGTTATTTGCAGATCAACAGGCACCCCAACAAAAATAAAAGCGGTGTTTCAAATAAATTATGGTGTTTCTATTTAGTGCAAGAGTTGTCAAAATGTGAATATTATACGTTCTTCGTTGAATGACAGCTGAAGGTTGTTTCTGAATATTATTTTATACTGTATATGACCATATTTTTCTTAAATTCCTTCCACATTCCATCTTAAATAAAATGGAGGAAATTATGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078701:ENSDART00000136759:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0289210=zf-BED=PU(36.4=39.0)
A:
NA
C2:
PF0289210=zf-BED=PD(61.4=5.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]