RnoINT0117021 @ rn6
Intron Retention
Gene
ENSRNOG00000007683 | Prdm13
Description
PR/SET domain 13 [Source:RGD Symbol;Acc:1589883]
Coordinates
chr5:35825077-35829462:-
Coord C1 exon
chr5:35829342-35829462
Coord A exon
chr5:35825990-35829341
Coord C2 exon
chr5:35825077-35825989
Length
3352 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCTCCCCTTTCTTGCTCAGGGG
3' ss Score
9.8
Exon sequences
Seq C1 exon
ATCTTCTATCGGGCATTGCGAGATGTCCAGCCAGGCGAAGAGCTAACTGTGTGGTATTCTAACTCCTTGGCTCAGTGGTTTGACATCCCTACAACTGCGACTCCGACTCATGATGAGAAAG
Seq A exon
GTACAGCCTCTGAGAAGGTCGCCCCAACACTGAGGGTGAGCAGAGTAGAGTCCACCTGTTCTCCCGGGTTGGGGAAGGTGATCACAGATCTGAAGAATTCTGTTCAGCTCTGTGGAAACCGAGTTCATGCCCTTGACAAGGGAGAGAGGGAACTGCTAACCTAAAACCACAAGCCAATGGTAATAAAGGTGAGTAATAATCTGGTCCCCAAGGACAGAGGAACACTCCTTATGAACTTCATGGGTCCTTCCTTCTGTATTTCATTCCGAACAACAAGTATTTACTCAGGGAAGAAACAATAAAGAAGACTTGATATGCTACAACGATGACATCTTGAATTCTAGAGACCAAAGCTTAAGCCCAGAATGCTTTTTAAAAGGCACAAGGGTGCTCTTTCTCTGTAAGGCTTACAGGAGAGCAGTATATTTGATGGCATTTAGAAGTATTGTGGTGCTTATAGCTGGTCCCTTGGCAGGTACTAATGTCCATACCTAAAATGGAGTTTATTCATTTCCCTACTAAGTTTACTTAAGCAGACTCTGGGATACCTCCCAGTTTCTTCTCAGACTTATTTGATTCCTTTCAAACCAAGAGCCAATCCATGCAAATTAAGGTGCAGCAAATAAAGAGAAAAAACATTTTCAAACCCTCCACCCCAGCACTGAAGGACACTTCCTTCGGGAAGAAGGCTGGGAAGTGCTAAAAAGAGTTAAATTCTTGAAACTCAGTTCTCATCCTTCACAAGGCATTCCCCTGGCCCTCATCCCTAACCCCTTGACAATTGTTTTAGCTTGTTCACAATTTCTCTAAAGAAGCTATTTATAGACAACAAAAAATGTTCCTAAGTATTTTTAATACACTCTCCTCCGGAACTGCCGCACCACTGTTCCCATTTAGAAACAGGTATATATATACATATATACATATATATATATCTCGATAAAAGTGTGATAATTAGCATGCCATTCATGAGTGGAACACATTATTCAGAGCAATGAGTCATTTCGCTTCAAAGTGTCACTGTCTTCTGTAAATCAGTTCTATTTGTTTTAAAATAGATTGGTATGTCCAATATTTGTAAGAATTGTACTGACATAGTTTGTCCCTTGAAGCACATTATCAGATTCTTTTGTCAATGATAAGTACTGCCGTACAGGGGAACCCTCAGACTCGGAACTCTCCAACAAATTGTTCCAGCACAGAACACTTTTACATAGGGATGACTAAACAGAAAAGCAACATGTTTAACCATGTATTCTATTTCAGCCACCTGGTTTTATAAATGCCATAAGGCAACTGATAATATAAAAAAATCTATCATTTCCCTGTTAGGGAAGGTATAGCCTATTTTGAACCTGATATTTCTAGACTGGGCATGCCTAAAATCTTTGAACTGACACGAGGGAGAGGGGCAAAGTCATTTAGGAAGAGTGTTTGACTCACTTGTCAAGAGTTGAACCTTAGGGTCTGCAAAACCTGTTGATGAAGTTAAGTTGGAAAAGTAATGTGTGGAACAACACGTACACACACCTGCACACATCTGCACACACTTGTGTTACATTTTGAGAAGAGGAAGAAATAGGTAGGAATAGCACCTCTTTTTAACAATACTGGCTAGCGTAAGTCAGTTTTCGTTTCATAAAAAGATGAAGCTACTGTCCCTTCATTTGTAAGAACAAAGCTTGCTTGGCTTTGCATTGGCAAAGTCATTCTGGAACAAACTGAAAACTCTTCTGTAGAGCTGCTGCAAAGGGGCTTCTGAATTTCAGACACCCAAAGAAAACTCAGGGGTCACTCCTCTTTCCAAAAGCTGCTTTACACAGACATTTAACACAGGCAGCAGGGATATTGAGATGGTCTTGTCCAAGTCTTCAATAAACAATTGGGATAGACTATTATAGGTAAATCCTTTTGTCTCCCCACTTCTCCTTTGACCTCTTGTGAAATAAACTCCTCCCCTCCTTTTAGACAATTTTGCTATGTAGTCCTGGCTGGTCTGGAACTCACTATATAGATCAAGCTGGCCTAGAACTCTGAACTCACAAAGATCTGCCTGCCTTTGCTTCCCAAGTGCTAGAATTAAAGGCATGTGCCACCCTAATGGGTTCTGTAGTAATGTTTTAGAAGTGTGAGCAGAGTGCACCTAAAGAGGGAGAATGTAATGTTTCAAGTAAATCTTAAGAGACCTACAATGTACTTTGGAATTTCCTCGTGGCCCAATCAACTTTTCTTACAGACATCTTTGGTATTATCAATCAATCACTTTAAAAAGAAACTGCATTGTATGCACACTAGTATGTAGAAGTTATTTTCTAGCATCCGATTAATAGCTATCTTATATACCTGTCTCTGGATTGTGTTTACAGACCATAACAAGTCAAAAACAGTTATAATGTAAGAGACACAAAGAATTGATGCTGCAAGGGCACACAAGCACAGCATTTGCGGTAGAGAATCTGCACTTTAAAAAACTGAGGACTTTTCTCATTTGTATATATTTATTAAGTGAAATATATCTTGCTCAAGTGCTTTTCTAAGCTTTTATCTGTGCTACTATCTAGGGGTTAATTAACCGCCAGGTAAAACAACCGTTAAGCCAACGCTTCACCATCCTTAAAATATCAGCAAGTAGTAGTTTTCCCCTCCAATCCAATCATATAAAGTTAAACCAGAAAATAAGGGTGCAAATAATTTTGAAGACTAGCATCATCCTTATGTGGGGATTCATTTGGTCACGCTCCAGGAAAACCTCAAGCAAGTGTTTAAGTCTGGGAGGGGGTAAAAGGGCGGAGAGAGGACACAAAAGACATTGTTATATGAAAAGGAATGATTACATATGGCCCATACATACAGGATATTGTCTCGCCTGGTAATGAGGCGCTCACGACTATTAGATTGGCCTTTGTTCAGTTTATCCAAACTCCTTGACATACGCCACCTATTCTGTAAACGCCAACAGATGGGCACAGGCACAGCACAGCCTCAACACTTGATTTAAGGCAACAGCTGCTCTCTGCTCTTCCCGGCTAGCCTTCCTGAGCAGGGCTCTTCCAAAGGAGATTTACTATGAGGGCTTGGTGGAAGTCTTCACTGGAAAGGTCCAGGTCACCTGCTTTGCTCTTTGAGTAGGCCTCTGAGGATGGAGGTGACAAGGGTTGACCATTTACACGCTTTGGGGGGTTCTTGATAGGGTTGCCGAACTTTATTCTTGGTCTTAAGACCTTCATCCCTCAACCCCCCACCCCCGTGCTTCTGCCTCGTCTCAGGTCAAACCGGGGCTGTCCCTGCTGGGCTGGTGCTTTCCTTCTGGTTCCCTTGCTTCTCACTTGTTCCTCTCCCCTTTCTTGCTCAG
Seq C2 exon
GGGAGGAGCGCTACATCTGCTGGTACTGCTGGAGGACCTTTCGATACCCGAACAGCCTCAAGGCACACCTGCGTTTCCACTGCGTGCTCAGCGGCGGCGGGGGCCGCGCCTTCCTGCCTCAGGAGCACGCGGCCCGGCCGGGCGCTTCCCCGGTGGCAGAAGGCCTCGGCCTCCCTCCGAAACCCACTGCCCCGGACTTGACGGCGCCCGTCCAGGCAGCCGCTCTGCGGCCTCAAGCCCAGGCCGCTCAGCTCTCCCAGGCGTGCGGGACGAGGGAGAGCATCAAGCGGGAGGCTTCCCTGGCGCCCCTGGCCTCCTCCCCGCCTCCCGGCAAGTGGGGGACGCCGAAGAAGGGCAAGGAGCAGCCGGACCGCGCTCACAGTCACTTCCTGGGGATCGTGGGCGGCTCCTCAGCCGGCAGCGCAGGCCTGCCCTTCTACCCTGGCGTGCGCTCCGCATTCAAGCCGGCCGGCCTGGCCCGGGCCGCTGCGCAGAGCGACCCCTACCGGGAAGAGGGCGGCGGCAAGGGGCCCGGGCTGGGGCTAGGCCGGCTGCTGGGCGGGGGCCGGGCGGCCGGGCGCCCGGGCAGTGGGGAGAGCCCGGCGGGCCACCACCACCATCACCACCACGCTCACCACCACCACCACCACCACCCCAAGTGCCTGCTGGCCGGGGAGCCGCCGCCCGCCGGCCTGCCGTGTCCTGGGGCCCTGCGGGCCTTCCCCCTGCTCGCCGGCCACCCGGAAGAGGCGTCGGCCTTCAAGCACGTGGAGCGGGCTCCGCCTGCCGCGGCCACGGCCGCCTCGCTGCCCGCCGCGCGCTACGCCGCTCTCCCGGCTCCCGGGCTCCCCGTGGAGCGCTGCGCGCTGCCGCCCCTCGACGCCGGCAGCCTCAAGGCGTACCCCGGGGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007683:ENSRNOT00000010126:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(50.0=46.3)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=7.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]