HsaINT1028168 @ hg38
Intron Retention
Gene
ENSG00000204469 | PRRC2A
Description
proline rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr6:31637042-31637324:+
Coord C1 exon
chr6:31637042-31637136
Coord A exon
chr6:31637137-31637233
Coord C2 exon
chr6:31637234-31637324
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
AGACGCCCTTCTTCCCTTAGGTC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTGCATCCAGTGGAACTAAAGCCGTTCCAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGGATCATCACGGACTCCCCCAACTGGAAG
Seq A exon
GTGAAACGGAATAGGGATGTGGACTTTCCAAGTGCTTCCTTACTTTGGAACCAGGGTCTGGATCCTAGGCTTGCCTTAGACGCCCTTCTTCCCTTAG
Seq C2 exon
GTCCTTCTCTGGCCTCAATTCCCGTCTCAAGGCCACGCCTTCCACCTACAGTGGAGTCTTCCGCACCCAGCGCGTCGACCTTTACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469:ENST00000376007:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTGGAACTAAAGCCGT
R:
CTGCTGGTAAAGGTCGACGC
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains