MmuINT0023934 @ mm10
Intron Retention
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35149510-35149794:-
Coord C1 exon
chr17:35149700-35149794
Coord A exon
chr17:35149601-35149699
Coord C2 exon
chr17:35149510-35149600
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CGTCACCTTTCCTCCCTTAGGCC
3' ss Score
10.87
Exon sequences
Seq C1 exon
CTGCACCCAGTAGAACTAAAGCCTTTCCAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCGTCACGGACTCCCCCATCTGGAAG
Seq A exon
GTAAACAGGAGTGGGATATCGGCTCTGCATCCCCAGGGACTTTTTTTGAAACATGGGCAGGCCTTGGGTTTACCCTGACCGTCACCTTTCCTCCCTTAG
Seq C2 exon
GCCCTTCTCTGGTCTCAATTCCCGTCTCAAGGCCCCACCTTCCACCTACAGTGGAGTATTCCGAACTCAGCGCATTGACCTCTACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393:ENSMUST00000025253:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCCAGTAGAACTAAAGCC
R:
CTGGTAGAGGTCAATGCGCTG
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types