HsaINT1028170 @ hg38
Intron Retention
Gene
ENSG00000204469 | PRRC2A
Description
proline rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr6:31637234-31637771:+
Coord C1 exon
chr6:31637234-31637324
Coord A exon
chr6:31637325-31637445
Coord C2 exon
chr6:31637446-31637771
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
AACACATGCCTGTCCCCTAGGCC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTCCTTCTCTGGCCTCAATTCCCGTCTCAAGGCCACGCCTTCCACCTACAGTGGAGTCTTCCGCACCCAGCGCGTCGACCTTTACCAGCAG
Seq A exon
GTGAAGGAGAAACCCTTGTGGCCCCAACTCTAAATTCGAGTTGCCACCTGATTTCCTGTCCTTCCGTCTCATCGCTGACCTCTCACTGTGACTCACTGTTTAACACATGCCTGTCCCCTAG
Seq C2 exon
GCCTCCCCACCAGATGCCCTGCGCTGGATACCTAAGCCTTGGGAGCGGACAGGGCCGCCACCTCGAGAAGGGCCCTCCCGACGGGCAGAGGAGCCTGGGTCCCGAGGGGACAAGGAGCCTGGGTTGCCCCCACCCCGCTGAGGGAGTTCCTCTTGCCCCCTACCCCCGGGGCTTGTATATAGATTATAAATATATAAGGGGGAAAGGGGTGGGCGGGGAGGGGTTCTGGGGCTGGGGCCTCACTTCCCCTCCTCCCCCTTCCCCTGGTCCCCTGTCCCTGGGGCTGTTTGTTAAAAAAGAGTAATAAAAGGATTTAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469:ENST00000376007:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAATTCCCGTCTCAAGGCC
R:
ATATACAAGCCCCGGGGGTAG
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains