RnoINT0118593 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5139890-5140387:-
Coord C1 exon
chr20:5140297-5140387
Coord A exon
chr20:5140201-5140296
Coord C2 exon
chr20:5139890-5140200
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CGTACCCCGTCCTTCCTCAGGCT
3' ss Score
9
Exon sequences
Seq C1 exon
GTCCTTCTCTGGTCTCAATTCCCGGCTCAAGGCCCCACCTTCCACCTACAGTGGAGTATTCCGGACTCAGCGCATTGACCTCTACCAGCAG
Seq A exon
GTGAAGGAGTGACCCTACCCCAGTACAGCAGGTCCCCTTCTGAGCCTCGGAAGGATTGCTAACTCACTCTGCCACACGTACCCCGTCCTTCCTCAG
Seq C2 exon
GCTTCCCCACCAGATGCCCTGCGCTGGATGCCGAAGCCTTGGGAACGGACAGGGCCACCTTCTCGAGAAGGGCCTCCCCGAAGAGCAGAGGAGCCCGGGCCCCGGGGGGAGAAGGAGCCTGGATTGCCTCCACCCCGCTGAGGGAGTTCCCCTTGACCCCATCCCCGGGGCTTGTATATAGATTATAAATATATAAGAGGGAAGGGGTGGGTGGGGAGGGGTCGTGGGTCTGGAGTCTCACTGCCCCTCTTCTCTTCCCCTAGTCCCCTATCCCTGGGGCCGTTTGTTAAAAAAGAATAATAAAAGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATTGACCTCTACCAGCAG
R:
ATGGGGTCAAGGGGAACTCC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]