HsaINT1028180 @ hg38
Intron Retention
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32150368-32151899:-
Coord C1 exon
chr6:32151809-32151899
Coord A exon
chr6:32150584-32151808
Coord C2 exon
chr6:32150368-32150583
Length
1225 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CACCCGACCCTTACCTGCAGGAG
3' ss Score
8.95
Exon sequences
Seq C1 exon
CACCCAGACTCCAGCACCGGCCGAGGACCCCCACTCCGGCTGCAGGGACCCTGTCCCAGCGAGACCGCAGGCATGTCATCCGAAAAGTCAG
Seq A exon
GTAAAAACAATAACAAAACCTCCCACCCCCTCCACTGTCTCCAGACTCTCCGTCCCCCTTGCCCCAACCCCCTCCCTTACCCCTCCTCAGCTGTGGTTCTATTTCATTCCCCTTCTCTCCAGCTCTCAACACTCCCCCAGTCCCCCTCCTCTTTCTGTCTCCCCCTTTCTCTTCCTTTCCTCTTTCCAGTGGCAGCCTCTGCCCCTTGCCAACAACATGGTCAGGGGGGTAGGTTGAGAGGGTGAAGGAGGTACAGCCAGGTTTTGCAGGGATGGCATCATTGGGAGTGACAGATGGACAATCACTGGCTGGCATGGAGACATCCTGTGAGGAAATATGGAGACATGACCAGATGGGGGTTGTCAAGGGAGCAAAATCCAGAGGGCTCTTCTTAATCTGCCCTAAAAGAGGTCCCGAGATTCTCACAGAGGCTGGGGCACTCCTCCCCCCACTGAAGGAACAGCAGAGTGGAACACATGTCATCCCACATGTGTTTATACAACTGTTGAATTGAGCACATATTAACACAGGGTTGCATGTCTACGCATACGCACACACAGGACTAGCTCGGATAGGCCAGCCCAAAGGCAGCTATAGCAAAGGAGAGGGGATTAGGTCTGCAGGTGAGAGCTGGGTGCATGGTGATGAAAAAGACAGAAAAGAAGCAGACCAGAGTTGTGACCTCAAAACTAGATTGGAAGGAAGAAGGAGGGGGGCAGATGGCCTAGATACAGCCCCTCTCTTGCCCCTCAAATTAGAGATGGTTTCTCACCCGTCTCTCTCTATGTGTCTCTCCCATTATCTTTCTCCATCCCTGACCGGCTGTGTTTCCCCTTACCCCCTCCTCAACTCATCACTGTGTCATCTTTCCTCTTATACTCTCCTCCACTCACCTCCCCCAGGACTCCCAGACTCAGTCCCTCACACTTCTCCGCCGCCCTACAATGCCCCTCAGCCTCCAGCCGAACCCCCAGCCCCACCGCCACAGGCAGCCCCTTCCTCACACCATCACCACCACCACCACTACCATCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGGGCAGGGGGCCTGGCCTCTTCCGCGGCCACCGCTCAGCGCGGTCCCTCCTCCTCTGCCACGCTGCCGAGGCCCCCCCACCACGCCCCTCCCGGCCCTGCTGCCGGGGCACCCCCACCCGGCTGCGCTACCTTGCCCCGCATGCCACCCGACCCTTACCTGCAG
Seq C2 exon
GAGACTCGCTTCGAGGGCCCACTTCCCCCGCCGCCGCCCGCTGCCGCCGCCCCGCCCCCGCCGGCGCCAGCCCAGACTGCCCAGGCCCCTGGCTTCGTGGTGCCCACGCACGCGGGGACTGTGGGCACGCTGCCGCTGGGGGGCTACGTAGCGCCCGGATACCCCCTGCAGCTGCAGCCTTGCACTGCTTACGTGCCGGTCTACCCGGTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314:ENST00000375150:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGACTCCAGCACCG
R:
GTGCCCACCGGGTAGACC
Band lengths:
305-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains